CK933023

Overview
NameCK933023
Unique NameCK933023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:1..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.681e-22
Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL + PRKRA     +  ++P+   +   +   F GYK GMTH++   +   S    K+    VT++E           Y +   G  +L   W   L EE+ RR                   ++T    ++++A + + K   S +  LA+T+  ++ G+ +K   LME+++ GG++ +++ YA     K+I +    +  E +D+  VT GKG EG V RWGV
Sbjct:    3 KINRPRRGSLAYSPRKRAKSPVPRYGSWPEYTGAPAVQ--GFAGYKVGMTHVIMVDDHKSSPTEGKDVMVPVTVVEVPPMRVAGVRAYGEDTYGKHALTEAWTTDLDEELSRRI-------------NVPKNHDTAAALEAVKAAVGEGK--VSELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGV 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22
Identity = 72/233 (30.90%), Postives = 113/233 (48.50%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E           Y  +P G + +   W   L   E      KN               Y+TDE    I A+L K K   + +RV+  T   ++ G+ +K   LME ++ GG +A++ ++A     K + +  VF   E++D+  +TKG G +G V RWG+
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNG--------------YKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGI 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 74/240 (30.83%), Postives = 116/240 (48.33%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL F PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIET          Y +   GL +   V         ++S++ + R +  +              Y  D+ ++ +   LE + K   +V V A    +      +KK  +ME  + G ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+
Sbjct:    3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 79/242 (32.64%), Postives = 118/242 (48.76%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHL-------SEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV-VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL F PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIET          Y +   GL +   V            S++ + R +  +              Y  +E ++ + A  + IK+   V VR L  TQ   +K   +KK  +ME  + G ++ EK +Y      K+I V  V ++ E++D+I VTKGKG +G V RWG+
Sbjct:    3 KIHRPRKGSLAFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPGLT-NGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETAGEVIVPDFELDNYTPSKKGKGRKF-TFYQFLGRRIATLPKDYTQEEFEQKLGALEDMIKEGEIVEVRALVSTQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 237          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 66/234 (28.21%), Postives = 106/234 (45.30%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 775
            PR GS+GF PRKRA     +++++  +D +   +   F GYKAGMT ++   ++  S     E    VT++ET          Y  TP G + L  VW +     + R                    +E D       A+   I      VR++ HT    M+ + +K   +ME +V GGT+ ++V++         +  +  +F+  E +D  GVTKGKG +G V R+GV +
Sbjct:    7 PRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSPREGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-----------DLPNEDTFEDDAAALRDDAETGDIDD----VRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEFGLDLISDGGEHEISDIFRAGEYLDAAGVTKGKGTQGPVKRFGVQK 223          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.387e-20
Identity = 64/230 (27.83%), Postives = 106/230 (46.09%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++   WA  L  E++RR                       EG ++I   +E+ +   S +R + +T  + + G+ +K   +ME  ++   +  K +YA       + V  VF+   ++D   +T GKG +G V RWG+
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAITIGKGTQGPVKRWGI 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.071e-20
Identity = 64/239 (26.78%), Postives = 104/239 (43.51%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIET          Y K   G  ++   W   L +++ RR                            + A LEK++       A+ +R++ +T    + G+ +K   +ME  V+G  +  K +YA       + +  VF   +++D+  +T G G +G V RWG+
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGI 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.944e-20
Identity = 74/241 (30.71%), Postives = 108/241 (44.81%), Query Frame = 2
Query:   68 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEE-------VRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            +   PR GSL + PRKRA     +++ +P++   +  R+  F GYKAGMTH++   + PG     KE    VTI+E           Y +   GL +   V       E           FYK               +  T+E  +    +LE + K   VV + A    +      +KK  +ME  V G +I EK +Y      K+I V  + Q+ E++DI+ VTKGKG +G V RWGV
Sbjct:    3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPGLT-KGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNVTFYK-----LLERRIKTLPKNYTEEVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGV 234          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.944e-20
Identity = 66/230 (28.70%), Postives = 103/230 (44.78%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIET          Y +   G +++  VWA  L  E++RR                       E   +I   +E+ K   S +R + +T  + + G+ +K   +ME  ++   +  K +YA       + +  VF+   +ID   +T GKG +G   RWG+
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGI 219          
BLAST of CK933023 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 64/230 (27.83%), Postives = 106/230 (46.09%), Query Frame = 2
Query:   80 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV 769
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++  VWA  L  E++RR                       E  ++I   +E+ +   S VR + +T  + + G+ +K   +ME  ++   +  K +Y+       + V  VF+   ++D   +T GKG +G V RWG+
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGI 219          
The following BLAST results are available for this feature:
BLAST of CK933023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL3_METMJ5.681e-2228.2150S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_UNCMA7.419e-2230.9050S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_PYRAB2.159e-2130.8350S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_PYRHO4.809e-2132.6450S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_HALWD8.203e-2128.2150S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]
RL3_METMA2.387e-2027.8350S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METBU4.071e-2026.7850S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_THESM6.944e-2030.7150S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_METBF6.944e-2028.7050S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METAC9.070e-2027.8350S ribosomal protein L3P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933023 ID=CK933023; Name=CK933023; organism=Citrus sinensis; type=EST; length=780bp
GGGGCCAGCTCTAGACCATAACGAGTCAGTCGCCGCAGCAGCTCAGAGGA
GGAGAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGA
TTTCTTCCAAGGAAGAGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTT
TCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTT
ACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCT
AAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCC
TCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTC
TTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGA
AGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAA
ATACTCAAAGCAGTATGAGACAGATGAAGGGAAGAAAAGTATCCAAGCTC
AGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCAC
ACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGAT
GGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCAT
ATGGCTTCTTTGAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGAT
GAGATGATTGACATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGT
TGTCACCCGTTGGGGTGTTACCCGCCTTCC
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