CK933033

Overview
NameCK933033
Unique NameCK933033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933033_ssr63 microsatellite CK933033_ssr63:63..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7909 contig Csv1_Contig7909:264..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_CHLRE (Photosystem I reaction center subunit IV, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAE PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            VKILR ESYW+N +G VV+VDQ    RYPVVVRF   NYA V+TNNYALDE+   K
Sbjct:   43 VKILRPESYWFNQVGKVVSVDQSGV-RYPVVVRFENQNYAGVTTNNYALDEVVAAK 97          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_ANASP (Photosystem I reaction center subunit IV OS=Anabaena sp. (strain PCC 7120) GN=psaE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V+ILR ESYW+  +G+V +VDQ    +YPV+VRF+KVNYA ++TNN+A+DE+ EV+
Sbjct:    8 VRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFDKVNYAGINTNNFAVDELIEVE 62          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_CYACA (Photosystem I reaction center subunit IV OS=Cyanidium caldarium GN=psaE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V+ILR ESYW+N IG+V  VDQ    RYPV+VRF+KVNY+ ++TNN+A++E+ E++
Sbjct:    8 VRILRPESYWHNEIGTVATVDQSG-IRYPVIVRFDKVNYSGINTNNFAVNELVEIQ 62          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_MASLA (Photosystem I reaction center subunit IV OS=Mastigocladus laminosus GN=psaE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V+ILR ESYW+  IG+V +++Q    RYPV+VRF+KVNYA V+TNN+A  E+ EV+
Sbjct:    8 VRILRPESYWFQDIGTVASIEQGGTIRYPVIVRFDKVNYAGVNTNNFAEYELVEVE 63          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_ANAVT (Photosystem I reaction center subunit IV OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaE PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 31/56 (55.36%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V+ILR ESYW+  +G+V +VDQ    +YPV+VRF+KVNY+ ++TNN+A+DE+ EV+
Sbjct:    8 VRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFDKVNYSGINTNNFAVDELIEVE 62          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_PHATR (Photosystem I reaction center subunit IV OS=Phaeodactylum tricornutum GN=psaE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 509
            V+ILR ESYW+N +G+V  VDQ    RYP VVRF KVNY+  +TNN+AL E+ EV
Sbjct:    8 VRILREESYWFNEVGTVATVDQSG-IRYPAVVRFEKVNYSGTNTNNFALSELVEV 61          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_GUITH (Photosystem I reaction center subunit IV OS=Guillardia theta GN=psaE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 509
            V+ILR+ESYWY  +G+V  VD     RYPVVVRF KV+Y+ V+TNN++LDE+ EV
Sbjct:    8 VRILRKESYWYQEVGTVATVDTSG-IRYPVVVRFEKVSYSGVNTNNFSLDEVIEV 61          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_NOSS8 (Photosystem I reaction center subunit IV OS=Nostoc sp. (strain PCC 8009) GN=psaE PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V+ILR ESYW+  +G+V +VDQ    +YPV+VRF KVNY+ ++TNN+A DE+ EV+
Sbjct:    8 VRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFEKVNYSGINTNNFAEDELVEVE 62          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_ODOSI (Photosystem I reaction center subunit IV OS=Odontella sinensis GN=psaE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 509
            V+ILR+ESYW+N +G++  +DQ    RYP VVRF  VNY+  +TNN+AL+E+ EV
Sbjct:    8 VRILRKESYWFNQVGTIATIDQSG-IRYPAVVRFENVNYSGTNTNNFALEELIEV 61          
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_NOSP7 (Photosystem I reaction center subunit IV OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 30/56 (53.57%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V+ILR ESYW+  +G+V ++DQ    +YPV+VRF KVNY+ ++TNN+A DE+ EV+
Sbjct:    8 VRILRPESYWFQDLGTVASIDQSG-IKYPVIVRFEKVNYSGINTNNFAQDELVEVE 62          
The following BLAST results are available for this feature:
BLAST of CK933033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAE_CHLRE6.737e-1366.07Photosystem I reaction center subunit IV, chloropl... [more]
PSAE_ANASP4.367e-1257.14Photosystem I reaction center subunit IV OS=Anabae... [more]
PSAE_CYACA5.703e-1257.14Photosystem I reaction center subunit IV OS=Cyanid... [more]
PSAE_MASLA7.448e-1257.14Photosystem I reaction center subunit IV OS=Mastig... [more]
PSAE_ANAVT9.728e-1255.36Photosystem I reaction center subunit IV OS=Anabae... [more]
PSAE_PHATR1.271e-1160.00Photosystem I reaction center subunit IV OS=Phaeod... [more]
PSAE_GUITH1.271e-1160.00Photosystem I reaction center subunit IV OS=Guilla... [more]
PSAE_NOSS82.830e-1155.36Photosystem I reaction center subunit IV OS=Nostoc... [more]
PSAE_ODOSI3.697e-1154.55Photosystem I reaction center subunit IV OS=Odonte... [more]
PSAE_NOSP73.697e-1153.57Photosystem I reaction center subunit IV OS=Nostoc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933033 ID=CK933033; Name=CK933033; organism=Citrus sinensis; type=EST; length=692bp
GGGGACTGTCCTTTTGCACATTTTATTTTCTGCAACTCTCTCCCCAGTTA
AACAGAAACAGCGAAAGAAAGAAAGAAAAAGTGATGGCTAGCTGCAACAT
GGCATCAGCTGCTTCTGGGTTTTCGCTGACACCCAATGTTGCGACCAATG
TAAACTCAGGTTCCAAGAGCAACATGCTGTTTTTCCCTCCAAAGAACAAC
AGCTCCAACAGTTTCAGGCTTGTTGTACGGGCTTCTGAGGAGGCTGCTGC
CCCGCCGGCTGCTGCCACCACCGCTGCCCCAGCTGAAGGTGAAGCAGCTC
CCAAGCCCAAGCCACCTCCGATTGGACCCAAGAGAGGCGCCAAGGTTAAG
ATTCTCAGGAGGGAGTCCTACTGGTACAATGGCATTGGGTCTGTGGTTGC
TGTTGACCAGGATCCCAAGAGTCGGTACCCAGTTGTGGTTCGATTCAACA
AGGTTAACTATGCAAATGTATCAACGAACAACTATGCATTGGATGAGATC
GAAGAAGTTAAATGAGTTATGTAATTTGGATTTGCATATTATTCCCCGCT
CTAGATTAAGCCTTTGTGTGCCAGGAATGTGTATTCTATTCTCCAAGTGA
ATTCTTCTTCTGTCTACTTCGCCATCATGTTTATGCTTATCCAACGAAAA
GATGTTCACAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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