CK933033

Overview
NameCK933033
Unique NameCK933033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933033_ssr63 microsatellite CK933033_ssr63:63..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7909 contig Csv1_Contig7909:264..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933033 vs. ExPASy Swiss-Prot
Match: PSAE_SYNJA (Photosystem I reaction center subunit IV OS=Synechococcus sp. (strain JA-3-3Ab) GN=psaE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  345 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 512
            V++LR+ESYWY  +G+V AVD      YPV+VRF+K+NY N++TNN+  DE+E V+
Sbjct:    9 VRVLRKESYWYRDVGTVAAVDTSG-ILYPVIVRFDKINYYNINTNNFREDELEVVE 63
The following BLAST results are available for this feature:
BLAST of CK933033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAE_SYNJA4.828e-1153.57Photosystem I reaction center subunit IV OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004348_E01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933033 ID=CK933033; Name=CK933033; organism=Citrus sinensis; type=EST; length=692bp
GGGGACTGTCCTTTTGCACATTTTATTTTCTGCAACTCTCTCCCCAGTTA
AACAGAAACAGCGAAAGAAAGAAAGAAAAAGTGATGGCTAGCTGCAACAT
GGCATCAGCTGCTTCTGGGTTTTCGCTGACACCCAATGTTGCGACCAATG
TAAACTCAGGTTCCAAGAGCAACATGCTGTTTTTCCCTCCAAAGAACAAC
AGCTCCAACAGTTTCAGGCTTGTTGTACGGGCTTCTGAGGAGGCTGCTGC
CCCGCCGGCTGCTGCCACCACCGCTGCCCCAGCTGAAGGTGAAGCAGCTC
CCAAGCCCAAGCCACCTCCGATTGGACCCAAGAGAGGCGCCAAGGTTAAG
ATTCTCAGGAGGGAGTCCTACTGGTACAATGGCATTGGGTCTGTGGTTGC
TGTTGACCAGGATCCCAAGAGTCGGTACCCAGTTGTGGTTCGATTCAACA
AGGTTAACTATGCAAATGTATCAACGAACAACTATGCATTGGATGAGATC
GAAGAAGTTAAATGAGTTATGTAATTTGGATTTGCATATTATTCCCCGCT
CTAGATTAAGCCTTTGTGTGCCAGGAATGTGTATTCTATTCTCCAAGTGA
ATTCTTCTTCTGTCTACTTCGCCATCATGTTTATGCTTATCCAACGAAAA
GATGTTCACAACTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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