CK933035

Overview
NameCK933035
Unique NameCK933035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3163 contig Csv1_Contig3163:69..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.011e-35
Identity = 81/171 (47.37%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  170 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGQFENPANPEIYYETTGPEIWNDSGGKVD 679
            I  D +  IG+TP+V L +   G    +  K+E   P  SVK RI  +M+  AE  G +T GK + ++ TSGNTGI LA++AA+RGYK+ + MP T S+ER+ +L  LG  + L + A G +G + K EEI+   P+ Y+ L QFENPANP+I+ ETTGPEIW D+ GKVD
Sbjct:    3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVD 170          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.981e-35
Identity = 83/197 (42.13%), Postives = 111/197 (56.35%), Query Frame = 2
Query:  182 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            + + +G+TP+V L  +       +  KLE   P  SVKDR A SMI  AE +G I PG T LIE TSGNTGI LA  AA +GYK+I+IMP   + ER+  + A GAE+ L     G EG  +   + L R   G +L QF N  NPE +Y +TGPEIW  +GG +  F              R+LKE+NP +++ G+
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEG-ARDLADKLQREGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 202          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.981e-35
Identity = 84/195 (43.08%), Postives = 112/195 (57.44%), Query Frame = 2
Query:  188 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            + IG+TP+V L  +     + +  KLE   P  SVKDR A SMI +AE +G I PG  VLIE TSGNTGI LA IAA +GY++ ++MP   S ERR  +RA GAE+ L     G EG      E+ NR   G +L QF NP NP  +Y TTGPEIW  +GG++  F              RF++E++  + + G+
Sbjct:    6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANR-GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL 198          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSK_EMENI (Cysteine synthase OS=Emericella nidulans GN=cysB PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.224e-34
Identity = 82/171 (47.95%), Postives = 107/171 (62.57%), Query Frame = 2
Query:  182 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAF 685
            +TE IG+TP++ L  + +   + I AK E   P  SVKDR A  ++KDAE++GL+ PG TV +E T+GNTGIGLA +  S+GYKL+I MP+T S  +  +LR LGAEVY   PAV F   E +  K         N     QF+N AN   + ETTGPEIW  +GGK+DAF
Sbjct:   36 LTEAIGNTPLIRLKRLSEETGSNILAKAEFQNPGGSVKDRAALYVVKDAEERGLLKPGGTV-VEGTAGNTGIGLAHVCRSKGYKLVIYMPNTQSQGKIDLLRLLGAEVYPV-PAVAFDNPENYNHKARRHAESLDNAVWTNQFDNTANRRAHIETTGPEIWAQTGGKLDAF 204          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.793e-34
Identity = 79/194 (40.72%), Postives = 109/194 (56.19%), Query Frame = 2
Query:  179 DVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIK 760
            D+TELIG+TP++ L N        + AKLEMM P  S+KDR+   +I+DA D G + PG  V+IE T+GNTGIGLA  A   G K I  +P  +S E++ I++ALGA +       G +G ++K  ++     N Y + QF+N  NP  YY+T GPE+W    G +  F               FLKEKNP +K
Sbjct:    6 DITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPGG-VIIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNIHTFVAGAGSGGTFAGTASFLKEKNPAVK 198          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.193e-33
Identity = 82/195 (42.05%), Postives = 109/195 (55.90%), Query Frame = 2
Query:  188 ELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            + IG+TP+V L  +     + I  KLE   P  SVKDR A SMI +AE +G I PG  VLIE TSGNTGI LA IAA +GY++ ++MP   S ERR  +RA GAE+ L     G EG  +     ++    G +L QF NP NP  +Y TTGPEIW  + G++  F              RFL+E+   + + G+
Sbjct:    6 QTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG-ARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGL 198          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CBS_RAT (Cystathionine beta-synthase OS=Rattus norvegicus GN=Cbs PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 85/207 (41.06%), Postives = 110/207 (53.14%), Query Frame = 2
Query:  167 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            +I  D+   IG+TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA +GY+ II+MP   S+E+  +LRALGAE+        F   E  V     + N  PN +IL Q+ N +NP  +Y+ T  EI     GKVD                R LKEK P  K+ G+
Sbjct:   72 KILPDILRKIGNTPMVRINRISKNAGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSMEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDDTAEEILQQCDGKVDMLVASAGTGGTITGIARKLKEKCPGCKIIGV 277          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CBS_MACFA (Cystathionine beta-synthase OS=Macaca fascicularis GN=CBS PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 85/211 (40.28%), Postives = 111/211 (52.61%), Query Frame = 2
Query:  155 EDKCEIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            E   +I  D+ + IG TPM+ +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA RGY+ II+MP   S E+  +LRALGAE+        F   E  V     + N  PN +IL Q+ N +NP  +Y+TT  EI     GK+D                R LKEK P  ++ G+
Sbjct:   71 EKSPKILPDILKKIGDTPMIRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERAGTLKPGDTI-IEPTSGNTGIGLALTAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILRQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV 280          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CBS_HUMAN (Cystathionine beta-synthase OS=Homo sapiens GN=CBS PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 85/207 (41.06%), Postives = 110/207 (53.14%), Query Frame = 2
Query:  167 EIKKDVTELIGHTPMVYLNNVVD--GCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            +I  D+ + IG TPMV +N +    G    + AK E      SVKDRI+  MI+DAE  G + PG T+ IE TSGNTGIGLA  AA RGY+ II+MP   S E+  +LRALGAE+        F   E  V     + N  PN +IL Q+ N +NP  +Y+TT  EI     GK+D                R LKEK P  ++ G+
Sbjct:   75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGV 280          
BLAST of CK933035 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.055e-32
Identity = 80/204 (39.22%), Postives = 119/204 (58.33%), Query Frame = 2
Query:  173 KKDVTELIGHTPMVYLNNVVDGCV---ARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGQFENPANPEIYYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGI 772
            ++ + +L+G+TP+V +   +   +     I AKLE   P  SVKDR A SM  DA  +GLI  GK V+I+ TSGNTGI LA + A+ G  + + MP+  S ER+ I++A GA++YL DP  G +G +    E++ + P  Y+ L Q+ NPAN + ++ +TG EIWN + G++  F              R LK  NPNI+V G+
Sbjct:   22 RETILKLVGNTPLVRVKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGK-VVIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPANWKAHFYSTGIEIWNQTKGRITHFVAGIGTGGTIMGTGRRLKIYNPNIQVIGV 224          
The following BLAST results are available for this feature:
BLAST of CK933035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_HAEIN2.011e-3547.37Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSM_PSEAE9.981e-3542.13Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSM_ECOLI9.981e-3543.08Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSK_EMENI2.224e-3447.95Cysteine synthase OS=Emericella nidulans GN=cysB P... [more]
MCCA_BACSU3.793e-3440.72O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_SALTY4.193e-3342.05Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CBS_RAT2.081e-3241.06Cystathionine beta-synthase OS=Rattus norvegicus G... [more]
CBS_MACFA3.550e-3240.28Cystathionine beta-synthase OS=Macaca fascicularis... [more]
CBS_HUMAN3.550e-3241.06Cystathionine beta-synthase OS=Homo sapiens GN=CBS... [more]
CYSM_AQUAE6.055e-3239.22Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004348_E03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933035 ID=CK933035; Name=CK933035; organism=Citrus sinensis; type=EST; length=780bp
GGGGGTGGATATGTATATATGTTTATCTTCAATGTCTGATGCATAATGTA
TTTCAGAGAAAAAATTACACCAGGAACTGGTATCTCCATTCAAACTGCCA
AGTGCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTC
CATGGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCC
ATACACCGATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGT
ATTGCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAG
AATTGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCC
CAGGGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGA
TTGGCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCC
ATCAACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTG
AGGTTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAG
GGTGAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACAATT
TGAAAATCCCGCGAATCCGGAGATTTATTACGAGACAACTGGCCCAGAGA
TATGGAACGACTCAGGAGGGAAGGTTGATGCTTTTATAGCAGGGATAGGA
ACTGGTGGTACTGTAACTGGTGCGGGGAGATTCCTTAAAGAAAAGAACCC
AAATATTAAGGTATATGGTATANNNNNATC
back to top