CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FTHFD_XENTR (10-formyltetrahydrofolate dehydrogenase OS=Xenopus tropicalis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.720e-24
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKT+   +P     I  V+     DIDRAVA A++AF+ G W KM P +R RI+ R AD++E++ EELA +E+ ++G  Y  +LK+ V M ++   Y+AGW DKI G T+P
Sbjct:  436 GKTYDTVNPTDGTAICKVSLAQVSDIDRAVAAAKEAFENGEWGKMNPRDRGRILYRLADIMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIP 546          

HSP 2 Score: 23.8682 bits (50), Expect = 2.720e-24
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  285 INGQFVDAASGK 320
            INGQF+DA  GK
Sbjct:  426 INGQFIDAEGGK 437          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            K FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADL+E++   LA +E+ N GK +  +   +V + ++ L Y+AGWADKIHG T+P DG     T  E
Sbjct:   36 KKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRRE 158          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.333e-23
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DG     T  E
Sbjct:   35 GKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSE 158          

HSP 2 Score: 23.0978 bits (48), Expect = 1.333e-23
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 3
Query:  219 STAAVVEEPI-IPPVQISYTKNLINGQFVDAASGK 320
            S++A+ + P  +  +Q  YTK  IN ++  + SGK
Sbjct:    2 SSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.718e-23
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GK++   +P     I  V+     DIDRAVA A++AF+ G W KM P +R R++ R ADL+E++ EELA +E+ ++G  Y  +LK+ V M ++   Y+AGW DKI G T+P
Sbjct:  436 GKSYDTINPTDGTAICKVSLAQISDIDRAVAAAKEAFENGEWGKMNPRDRGRLLYRLADLMEEHQEELATIESIDSGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGRTIP 546          

HSP 2 Score: 23.0978 bits (48), Expect = 1.718e-23
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  285 INGQFVDAASGK 320
            INGQF+DA  GK
Sbjct:  426 INGQFMDAEGGK 437          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.735e-23
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV++P T E +  V EGD ED+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E  N GK +  +   ++   ++ L Y AGWADKI G T+P DG     T  E
Sbjct:   35 GKKFPVFNPATEEKLCEVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDHLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGNFFTYTRSE 158          

HSP 2 Score: 23.0978 bits (48), Expect = 1.735e-23
Identity = 12/35 (34.29%), Postives = 21/35 (60.00%), Query Frame = 3
Query:  219 STAAVVEEPI-IPPVQISYTKNLINGQFVDAASGK 320
            S++A+ + P  +  +Q  YTK  IN ++  + SGK
Sbjct:    2 SSSAMPDVPAPLTNLQFKYTKIFINNEWHSSVSGK 36          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.735e-23
Identity = 55/124 (44.35%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV +P T E I  + EGD  D+D+AV  AR+AF  G PW  M   ER R++ + ADLIE++   LA +E+ N GK +  +   ++   ++ L Y AGWADKI G T+P DG     T HE
Sbjct:   30 GKKFPVLNPATEEQICLIEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESLNAGKLFPNAYLMDLGGCIKTLRYCAGWADKIQGRTMPMDGDFFCYTRHE 153          

HSP 2 Score: 24.6386 bits (52), Expect = 1.735e-23
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGK 320
            ++I YTK  IN ++ D+ SGK
Sbjct:   11 LKIQYTKIFINNEWHDSVSGK 31          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1L2_HUMAN (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Homo sapiens GN=ALDH1L2 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.908e-23
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKT+   +P     I  V+     D+D+AVA A+ AF+ G W +M   ER R+M R ADL+E+N EELA +E  ++G  Y  +LK+ + M V+   Y+AGW DKI G T+P
Sbjct:  457 GKTYDTINPTDGSTICKVSYASLADVDKAVAAAKDAFENGEWGRMNARERGRLMYRLADLLEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIP 567          

HSP 2 Score: 22.3274 bits (46), Expect = 2.908e-23
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  285 INGQFVDAASGK 320
            INGQF DA  GK
Sbjct:  447 INGQFTDADDGK 458          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GK FPV +P T EVI +V EGD  D+D+AV  AR+AF  G PW  M   ER  ++ + ADL+E++   LA +E+ N GK +  +   +  + ++ L Y+AGWADKIHG T+P DG     T  E
Sbjct:   35 GKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGDVFTYTRRE 158          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1B1_BOVIN (Aldehyde dehydrogenase X, mitochondrial (Fragment) OS=Bos taurus GN=ALDH1B1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23
Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            KTFP   P T EVI +VAEGD  D+D A   AR AF  G PW  M   +R  ++   ADL+E++   LA+LE+ +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG     T HE
Sbjct:   46 KTFPTVSPATGEVIGHVAEGDWADVDLAAKAARAAFRLGSPWRWMDALKRGWLLNHLADLVERDCVYLASLESLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHE 168          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: AL1L2_MOUSE (Probable 10-formyltetrahydrofolate dehydrogenase ALDH1L2 OS=Mus musculus GN=Aldh1l2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.923e-23
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            G+T+   +P     I  V+     D+DRAVA A+ AF+ G W +M   +R R+M R ADL+E+N EELA +E  ++G  Y  +LK+ + M V+   Y+AGW DKI G T+P
Sbjct:  457 GETYATVNPTDGTTICRVSHASLADVDRAVAAAKDAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDKIQGSTIP 567          

HSP 2 Score: 23.0978 bits (48), Expect = 4.923e-23
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  258 VQISYTKNLINGQFVDAASGK 320
            V+I Y +  INGQFVDA  G+
Sbjct:  439 VKIPY-QCFINGQFVDAEDGE 458          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
FTHFD_XENTR2.720e-2444.1410-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
AL1A7_MOUSE4.602e-2445.53Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_SHEEP1.333e-2344.35Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
FTHFD_XENLA1.718e-2343.2410-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
AL1A1_BOVIN1.735e-2344.35Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A1_RABIT1.735e-2344.35Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL1L2_HUMAN2.908e-2343.24Probable 10-formyltetrahydrofolate dehydrogenase A... [more]
AL1A7_RAT2.983e-2344.35Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1B1_BOVIN3.896e-2345.53Aldehyde dehydrogenase X, mitochondrial (Fragment)... [more]
AL1L2_MOUSE4.923e-2342.34Probable 10-formyltetrahydrofolate dehydrogenase A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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