CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURCM (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=betB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+AR+   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURA4 (Betaine aldehyde dehydrogenase OS=Burkholderia ambifaria (strain MC40-6) GN=betB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+AR+   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAREGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FTHFD_HUMAN (10-formyltetrahydrofolate dehydrogenase OS=Homo sapiens GN=ALDH1L1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            KT    +P    VI  V+     D+D+AVA A+ AF+ G W K++  +R R+M R ADL+E++ EELA +E  + G  Y  +LK+ V M ++   Y+AGW DKI G T+P
Sbjct:  437 KTSETINPTDGSVICQVSLAQVTDVDKAVAAAKDAFENGRWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGWCDKIQGSTIP 546          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURS3 (Betaine aldehyde dehydrogenase OS=Burkholderia sp. (strain 383) GN=betB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 53/123 (43.09%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAALET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAALETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURVG (Betaine aldehyde dehydrogenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=betB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.858e-20
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  +T  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQQGQRE--WAALTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          

HSP 2 Score: 20.4014 bits (41), Expect = 7.858e-20
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  285 INGQFVDAASGK 320
            I G +VDA SGK
Sbjct:   11 IGGAYVDATSGK 22          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURCJ (Betaine aldehyde dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=betB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.173e-19
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURCC (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3) GN=betB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.173e-19
Identity = 52/123 (42.28%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA DL+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WATMTAMQRSRILRRAVDLLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: CROM_OMMSL (Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.532e-19
Identity = 50/123 (40.65%), Postives = 73/123 (59.35%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            K +PVY+P   E +  V EGD  DID+AV   + AF  G PW +M       ++ R ADL+E+++  +A+LET + GKPY  S +  V   +++L Y+AGWADK  G ++P DG     T +E
Sbjct:   31 KAYPVYNPCDNEKVCEVQEGDKSDIDKAVQACKAAFKRGTPWRRMDASRLGHLLYRLADLMERDIAYMASLETMDTGKPYKNSYQDMV-HCIQVLRYFAGWADKNMGESIPVDGDFFCYTRNE 152          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURM1 (Betaine aldehyde dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=betB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.613e-19
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T +++A V +  A D+DRA+A+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAALET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGDLLAQVQQASAADVDRAIASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAALETRDTGKPIAETLAVDIVTGADVIEYYAGLATAIEGLQVPLRADSFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_BURCH (Betaine aldehyde dehydrogenase OS=Burkholderia cenocepacia (strain HI2424) GN=betB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.413e-19
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            GKTF  +DP T E++A V +  A D+DRAVA+A++   E  W  MT  +RSRI+ RA +L+ +  +ELAA+ET + GKP  ++L  ++     ++ YYAG A  I GL VP      + T  E
Sbjct:   21 GKTFDTFDPATGELLAQVQQASAADVDRAVASAQEGQRE--WAAMTAMQRSRILRRAVELLRERNDELAAIETRDTGKPIGETLAVDIVTGADVIEYYAGLATAIEGLQVPLRAESFVYTRRE 141          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
BETB_BURCM4.032e-2043.09Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
BETB_BURA44.032e-2043.09Betaine aldehyde dehydrogenase OS=Burkholderia amb... [more]
FTHFD_HUMAN6.877e-2041.8210-formyltetrahydrofolate dehydrogenase OS=Homo sa... [more]
BETB_BURS36.877e-2043.09Betaine aldehyde dehydrogenase OS=Burkholderia sp.... [more]
BETB_BURVG7.858e-2041.46Betaine aldehyde dehydrogenase OS=Burkholderia vie... [more]
BETB_BURCJ1.173e-1942.28Betaine aldehyde dehydrogenase OS=Burkholderia cep... [more]
BETB_BURCC1.173e-1942.28Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]
CROM_OMMSL1.532e-1940.65Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3[more]
BETB_BURM12.613e-1940.65Betaine aldehyde dehydrogenase OS=Burkholderia mul... [more]
BETB_BURCH3.413e-1941.46Betaine aldehyde dehydrogenase OS=Burkholderia cen... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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