CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ESCF3 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ydcW PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOSM (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.753e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SHISS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella sonnei (strain Ss046) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ENT38 (Gamma-aminobutyraldehyde dehydrogenase OS=Enterobacter sp. (strain 638) GN=Ent638_2124 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T EV+  +AE  A  +D AV  A +AF E  W   TP  R+  +L+ AD+IE++ E  A LE+ N GKP    +  E+P VV +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGEVLLEIAEASAAQVDAAVRAADRAFSE--WGHTTPKARAECLLKLADVIEEHAETFARLESQNCGKPLHCVISDEIPAVVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOSE (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLI (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=ydcW PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLC (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOHS (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECODH (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOBW (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.289e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVDAAVRAADAAFAE--WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
ABDH_ESCF31.753e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOSM1.753e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_SHISS2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_ENT382.289e-1540.74Gamma-aminobutyraldehyde dehydrogenase OS=Enteroba... [more]
ABDH_ECOSE2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOLI2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOLC2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOHS2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECODH2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOBW2.289e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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