CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_RAT (Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus GN=Ddx4 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.709e-28
Identity = 70/134 (52.24%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D +  FA  + TGINFD Y+ I VE SG + PP + TF E +L + LN NI +  Y K TPVQ+++IPI +AGRDLMACAQTGSGKTAAF  PI++ +MR+  +   R      P  +I+APTREL +QI+ EA
Sbjct:  239 DEDSIFAHYQ-TGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDG-ITASRFKELQEPECIIVAPTRELINQIYLEA 370          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.709e-28
Identity = 70/134 (52.24%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D +  FA  + TGINFD Y+ I VE SG + PP + TF E +L + LN NI +  Y K TPVQ+++IPI +AGRDLMACAQTGSGKTAAF  PI++ +MR+  +   R      P  +I+APTREL +QI+ EA
Sbjct:  227 DEDSIFAHYQ-TGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDG-ITASRFKELQEPECIIVAPTRELINQIYLEA 358          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 66/128 (51.56%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  511 TGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-----RTVYPLALILAPTRELSSQIHDEA 879
            +GINFD Y+DIPVE SG+NVP  +  F    L E L  N+    + KPTPVQ+++IPI    RDLMACAQTGSGKT  F FP++S +        P        R  YP AL+LAPTREL+ QI DEA
Sbjct:  114 SGINFDNYDDIPVEASGDNVPEAITEFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHSYMRKCYPSALVLAPTRELAIQIFDEA 241          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28
Identity = 64/134 (47.76%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG---------ARTVYPLALILAPTRELSSQIHDEA 879
            +++GINFD Y+DIPVE SGE+VP  +  F    L   L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT  F FP++S    E ++  P            R  +P A+++APTREL++QI DEA
Sbjct:  119 QSSGINFDNYDDIPVEASGEDVPEAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLS----ESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEA 248          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D +  FA  + TGINFD Y+ I VE SG + PP + TF E +L + LN NI +  Y K TPVQ+++IPI +AGRDLMACAQTGSGKTAAF  PI++ +M +  +   R      P  +I+APTREL +QI+ EA
Sbjct:  252 DEDSIFAHYQ-TGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDG-ITASRFKELQEPECIIVAPTRELVNQIYLEA 383          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 6.493e-28
Identity = 69/134 (51.49%), Postives = 90/134 (67.16%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D +  FA  + TGINFD Y+ I VE SG + PP + TF E +L + LN NI +  Y K TPVQ+++IPI +AGRDLMACAQTGSGKTAAF  PI++ +M +  +   R      P  +I+APTREL +QI+ EA
Sbjct:  254 DEDSIFAHYQ-TGINFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDG-ITASRFKELQEPECIIVAPTRELVNQIYLEA 385          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.108e-27
Identity = 68/132 (51.52%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  508 NTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS--------GIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            +TGINF+ Y+DIPVE SG ++ P VN F    L   L  NI+   Y +PTPVQ+++IPI  +GRDLMACAQTGSGKTA F FPI+S         +  +Q        R  YP  LILAPTREL  QIH+E+
Sbjct:  145 STGINFEKYDDIPVEVSGGDIEP-VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEES 275          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.889e-27
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D +  FA  + TGINFD Y+ I VE SG + PP + TF E +L + LN NI +  Y K TPVQ+++IPI   GRDLMACAQTGSGKTAAF  PI++ +MR+  +   R      P  +I+APTREL +QI+ EA
Sbjct:  256 DEDSIFAHYQ-TGINFDKYDTILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDG-ITASRFKELQEPECIIVAPTRELINQIYLEA 387          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.089e-26
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D +  FA  + TGI+FD Y+ I VE SG + PP + TF E +L + LN NI +  Y K TPVQ+++IPI +AGRDLMACAQTGSGKTAAF  PI++ +M +  +          P  +I+APTREL +QI+ EA
Sbjct:  255 DEDSIFAHYQ-TGISFDKYDTILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDG-ITASCFKELQEPECIIVAPTRELVNQIYLEA 386          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.335e-24
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            DA + F+    +GI+F  Y +IPV+ +G +VP P+  F   DL + +  N+ +  Y  PTP+Q+ +IP+  +GRDLMACAQTGSGKTAAF  PI+S ++ +     P       P  +I++PTREL+ QI +EA
Sbjct:  210 DAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED-----PHELELGRPQVVIVSPTRELAIQIFNEA 338          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX4_RAT1.709e-2852.24Probable ATP-dependent RNA helicase DDX4 OS=Rattus... [more]
DDX4_MOUSE1.709e-2852.24Probable ATP-dependent RNA helicase DDX4 OS=Mus mu... [more]
DBP1_CANGA3.806e-2851.56ATP-dependent RNA helicase DBP1 OS=Candida glabrat... [more]
DED1_CANGA6.493e-2847.76ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
DDX4_PIG6.493e-2851.49Probable ATP-dependent RNA helicase DDX4 OS=Sus sc... [more]
DDX4_HUMAN6.493e-2851.49Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DED1_SCHPO1.108e-2751.52ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]
DDX4_BOVIN1.889e-2751.49Probable ATP-dependent RNA helicase DDX4 OS=Bos ta... [more]
DDX4_MACFA2.089e-2650.00Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
VASA_DROME3.335e-2443.28ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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