CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +  SG   P   ++FA     E+L   IR+ +Y +PTP+Q   IP++++GRD++  A+TGSGKTAAF +PI+  IM ++ +Q   G     P+A+I+ PTREL  QIH E
Sbjct:  238 LRVSGAAPPRLCSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADG-----PIAVIVCPTRELCQQIHSE 342          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17
Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  523 FDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            F+  +++ +  +G ++  PV +F      + L   I +     PTP+Q+ AIPI+++GRDL+A A+TGSGKTA F +P IS IM + Y+++  G     P+AL LAPTREL+ QI+ E
Sbjct:  285 FEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDG-----PIALFLAPTRELAHQIYLE 397          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            GE+VP P+  F+   L E+L LN+    YV PTPVQ   IP S+  R L+  A TGSGKTA+F  PII+      +V+  R      PLA++LAPTREL  Q+ ++A
Sbjct:  129 GEDVPDPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHC---SHVRSERCTDKQGPLAIVLAPTRELCLQVEEQA 232          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  + T G   P P+ T+ E +L  E+   IR+  Y KP+P+Q  +IPIS+ GRD++  A+TGSGKT AF  P++  I ++  + +   A    P AL++APTREL  QI  E
Sbjct:  397 EDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADG--PYALVMAPTRELVQQIEKE 508          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  463 FGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            F +++++     E E T    D  + + +  SG +V  PV TF +     ++   I++  Y KPT +Q  A+PI ++GRD++  A+TGSGKTAAF  P+I  IM +  +QR  G     P+ +I APTREL+ QI  EA
Sbjct:  192 FYEELESISGMTEQETT----DYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG-----PIGVICAPTRELAHQIFLEA 321          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_MAGGR (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Magnaporthe grisea GN=PRP28 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++ + T G N+P P+  + E +L   L   I++  Y +PTPVQR AIPI++  RDL+  ++TGSGKTAAF  P++S I  E         +T  P ALILAPTREL++QI  E
Sbjct:  242 NLEIVTKGNNIPNPMRFWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYI--EPLPPLNEVTKTEGPYALILAPTRELATQIQAE 352          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++AE  L   L   + R  Y  PTP+QR AIPI++  RDL+  A TGSGKTAAF  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  327 EDFNIATKGGSVPNPMRSWAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 441          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  + T G  +P P+ ++ +  L   +   I +C Y +PTP+QR AIPI +  RD++  A+TGSGKTAAF  P++  I     + R   +    P A+ILAPTREL+ QI +E
Sbjct:  375 EDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEES-DQGPYAIILAPTRELAQQIEEE 487          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  + T G  +P P+ ++ +  L   +   I +C Y +PTP+QR AIPI +  RD++  A+TGSGKTAAF  P++  I     + R   +    P A+ILAPTREL+ QI +E
Sbjct:  375 EDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEES-DQGPYAIILAPTRELAQQIEEE 487          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_EMENI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans GN=prp28 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++ E  L + L   + R  Y +PTP+QR AIPI++  RDL+  A TGSGKTAAF  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  330 EDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 444          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX42_XENLA7.955e-1842.73ATP-dependent RNA helicase DDX42 OS=Xenopus laevis... [more]
DDX42_DICDI1.039e-1741.53Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]
RH41_ORYSJ1.357e-1745.79DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sa... [more]
DDX23_DICDI1.357e-1742.11ATP-dependent RNA helicase ddx23 OS=Dictyostelium ... [more]
RH24_ARATH1.772e-1738.13DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
PRP28_MAGGR1.772e-1745.13Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_ASPTN1.772e-1743.48Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX23_PONAB3.023e-1741.23Probable ATP-dependent RNA helicase DDX23 OS=Pongo... [more]
DDX23_HUMAN3.023e-1741.23Probable ATP-dependent RNA helicase DDX23 OS=Homo ... [more]
PRP28_EMENI3.948e-1742.61Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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