CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18 Identity = 47/110 (42.73%), Postives = 70/110 (63.64%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + SG P ++FA E+L IR+ +Y +PTP+Q IP++++GRD++ A+TGSGKTAAF +PI+ IM ++ +Q G P+A+I+ PTREL QIH E Sbjct: 238 LRVSGAAPPRLCSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADG-----PIAVIVCPTRELCQQIHSE 342
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.039e-17 Identity = 49/118 (41.53%), Postives = 75/118 (63.56%), Query Frame = 1 Query: 523 FDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 F+ +++ + +G ++ PV +F + L I + PTP+Q+ AIPI+++GRDL+A A+TGSGKTA F +P IS IM + Y+++ G P+AL LAPTREL+ QI+ E Sbjct: 285 FEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDG-----PIALFLAPTRELAHQIYLE 397
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17 Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 GE+VP P+ F+ L E+L LN+ YV PTPVQ IP S+ R L+ A TGSGKTA+F PII+ +V+ R PLA++LAPTREL Q+ ++A Sbjct: 129 GEDVPDPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHC---SHVRSERCTDKQGPLAIVLAPTRELCLQVEEQA 232
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.357e-17 Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + T G P P+ T+ E +L E+ IR+ Y KP+P+Q +IPIS+ GRD++ A+TGSGKT AF P++ I ++ + + A P AL++APTREL QI E Sbjct: 397 EDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADG--PYALVMAPTRELVQQIEKE 508
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17 Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = 1 Query: 463 FGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 F +++++ E E T D + + + SG +V PV TF + ++ I++ Y KPT +Q A+PI ++GRD++ A+TGSGKTAAF P+I IM + +QR G P+ +I APTREL+ QI EA Sbjct: 192 FYEELESISGMTEQETT----DYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG-----PIGVICAPTRELAHQIFLEA 321
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_MAGGR (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Magnaporthe grisea GN=PRP28 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17 Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ + T G N+P P+ + E +L L I++ Y +PTPVQR AIPI++ RDL+ ++TGSGKTAAF P++S I E +T P ALILAPTREL++QI E Sbjct: 242 NLEIVTKGNNIPNPMRFWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYI--EPLPPLNEVTKTEGPYALILAPTRELATQIQAE 352
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.772e-17 Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++AE L L + R Y PTP+QR AIPI++ RDL+ A TGSGKTAAF P++ I + + P A++LAPTREL+ QI EA Sbjct: 327 EDFNIATKGGSVPNPMRSWAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 441
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX23_PONAB (Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii GN=DDX23 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + T G +P P+ ++ + L + I +C Y +PTP+QR AIPI + RD++ A+TGSGKTAAF P++ I + R + P A+ILAPTREL+ QI +E Sbjct: 375 EDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEES-DQGPYAIILAPTRELAQQIEEE 487
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX23_HUMAN (Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens GN=DDX23 PE=1 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 3.023e-17 Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + T G +P P+ ++ + L + I +C Y +PTP+QR AIPI + RD++ A+TGSGKTAAF P++ I + R + P A+ILAPTREL+ QI +E Sbjct: 375 EDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEES-DQGPYAIILAPTRELAQQIEEE 487
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_EMENI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans GN=prp28 PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.948e-17 Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++ E L + L + R Y +PTP+QR AIPI++ RDL+ A TGSGKTAAF P++ I + + P A++LAPTREL+ QI EA Sbjct: 330 EDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 444 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |