CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPCL (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus GN=prp28 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17 Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++ E L + L + R Y +PTP+QR AIPI++ RDL+ A TGSGKTA+F P++ I + + P A++LAPTREL+ QI EA Sbjct: 350 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 464
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17 Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G ++P P+ ++ E L + L I + Y P+P+QR AIPI++ RDL+ A TGSGKTAAF P++ I + ++ P A+ILAPTREL+ QI +EA Sbjct: 361 EDFNISTKGGSIPNPMRSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEA 475
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPOR (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae GN=prp28 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17 Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++ E L + L + + Y +PTP+QR AIPI++ RDL+ A TGSGKTA+F P++ I + + P A++LAPTREL+ QI EA Sbjct: 351 EDFNISTKGGSVPNPMRSWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 465
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + G VP P+ ++E LG EL + + Y +P+P+Q +IP+ + RD++ A+TGSGKTAAF P++S I R + A P A+++APTREL+ QI +E Sbjct: 299 EDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEG--PYAVVMAPTRELAQQIEEE 410
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASHGO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ashbya gossypii GN=PRP5 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16 Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 V+ G + P P+ ++++ L + NL R ++ PTP+Q AIP ++GRD++ ++TGSGKT +F P ++R+ QRP G PL LIL+PTREL+ QIH+E Sbjct: 224 VQVRGRDCPRPILKWSQLGLNSGIMNLLTRELEFTVPTPIQAQAIPAIMSGRDVIGISKTGSGKTVSFILP----LLRQIKAQRPLGGDETGPLGLILSPTRELALQIHEE 330
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16 Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++ E L + L + + Y +PTP+QR AIPI++ RDL+ A TGSGKTA+F P++ I + + P A++LAPTREL+ QI EA Sbjct: 348 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 462
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16 Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ED + T G +VP P+ ++ E L + L + + Y +PTP+QR AIPI++ RDL+ A TGSGKTA+F P++ I + + P A++LAPTREL+ QI EA Sbjct: 348 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 462
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16 Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 1 Query: 526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 D ++ V+ +G++ P P+ ++A+ L E+++L +++ +Y KPT +Q IP + GRDL+ A+TGSGKT AF P+ I+ + P+ A +ALI++PTREL+ QIH E Sbjct: 490 DFRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQ-----PKSAPGEGMIALIMSPTRELALQIHVE 601
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ED + G +P P+ ++ E L EL + R Y KP+P+Q AIP+ + RD++ A+TGSGKTAAF P+++ I R + T P A+++APTREL+ QI +E Sbjct: 297 EDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEEN--ETEGPYAVVMAPTRELAQQIEEE 408
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 E PF + E P A+ +N E + G+ P P+ ++ + + ++ ++++ Y KPTP+Q AIP ++GRDL+ A+TGSGKT AF P+ IM ++ ++ G P+A+I+ PTREL+ QI E Sbjct: 327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |