CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 E PF + E P A+ +N E + G+ P P+ ++ + + ++ ++++ Y KPTP+Q AIP ++GRDL+ A+TGSGKT AF P+ IM ++ ++ G P+A+I+ PTREL+ QI E Sbjct: 327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 E PF + E P A+ +N E + G+ P P+ ++ + + ++ ++++ Y KPTP+Q AIP ++GRDL+ A+TGSGKT AF P+ IM ++ ++ G P+A+I+ PTREL+ QI E Sbjct: 327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 E PF + E P A+ +N E + G+ P P+ ++ + + ++ ++++ Y KPTP+Q AIP ++GRDL+ A+TGSGKT AF P+ IM ++ ++ G P+A+I+ PTREL+ QI E Sbjct: 327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16 Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 ++ G+NVP P+ TF E + + IRR + P+ +Q A P++++GRDL+A A+TGSGKT +FC P + I + + G P+ LILAPTREL+ QI EA Sbjct: 98 MKIQGKNVPRPITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDG-----PIVLILAPTRELAVQIQTEA 203
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16 Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1 Query: 553 TSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 TS + PP V +F E DL EL +I+ KY +PTP+Q AIP ++ G+D++ A+TGSGKTAAF PI+ + A+ Y AL+LAPTREL+ QI + Sbjct: 88 TSSSSSPPSVQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLY--------TAAQPYY--ALVLAPTRELAFQIKE 184
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_PICST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia stipitis GN=PRP28 PE=3 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16 Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 535 EDIPVETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR--EQYVQRPRGARTVY--PLALILAPTRELSSQIHDEA 879 ED + + G ++ P+ T+ E + +L ++ + + +Y++PTP+QR AIP+++ RD++ A+TGSGKT AF P++S I+ + Y++ Y PL LILAPTREL+ QI EA Sbjct: 40 EDYGITSKGGDIDNPLRTWNEASIPSKLLSIIVDKLEYLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEA 159
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16 Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 550 ETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + SGE++P P+ +F ++ L ++L N+ + +PTP+Q AIPIS+ GRDL+ACA TGSGKT AF P++ I++ + G R LI++PT EL+ QI E Sbjct: 99 KVSGEDIPLPIGSFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIR-----GLIISPTNELAVQIFQE 206
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_PHANO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Phaeosphaeria nodorum GN=PRP5 PE=3 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16 Identity = 56/147 (38.10%), Postives = 82/147 (55.78%), Query Frame = 1 Query: 451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSG-----ENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 E PF D E AE T ++ + D+ E G ++VP PV +A++ L ++ R Y +PT +Q AIPI+ +GRDL+ A+TGSGKT AF P+I ++ ++ ++ G P+ LILAPTRELS QI +E Sbjct: 499 EYEPFRKDFYTEP----AEITQMSAEDVADLRHELDGIKVKPDDVPRPVTKWAQMGLLQQTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADG-----PIGLILAPTRELSLQIVNE 636
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16 Identity = 49/132 (37.12%), Postives = 66/132 (50.00%), Query Frame = 1 Query: 484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 E PF A + + + G+ V P+ F E LN N+++ Y PTP+Q IP+ + GRD++A A TGSGKTAAF P+I + E P ALIL PTREL+ QI +A Sbjct: 170 EHPFIVALRDDQIETLKQQLGISVQGQEVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRALPEDKT----------PSALILTPTRELAIQIERQA 291
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 547 VETSGE-----NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 VET+ E N +TF+E++L EL I + KY KPTP+Q AIP ++ G+D++ AQTGSGKTAAF PI+ + QRP AL+LAPTREL+ QI + Sbjct: 47 VETTSEASQDVNSEQQFHTFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWE---AQRPY-------YALVLAPTRELAYQIKE 150 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |