CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            E  PF  +   E P  A+     +N    E   +   G+  P P+ ++ +  +  ++  ++++  Y KPTP+Q  AIP  ++GRDL+  A+TGSGKT AF  P+   IM ++ ++   G     P+A+I+ PTREL+ QI  E
Sbjct:  327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            E  PF  +   E P  A+     +N    E   +   G+  P P+ ++ +  +  ++  ++++  Y KPTP+Q  AIP  ++GRDL+  A+TGSGKT AF  P+   IM ++ ++   G     P+A+I+ PTREL+ QI  E
Sbjct:  327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            E  PF  +   E P  A+     +N    E   +   G+  P P+ ++ +  +  ++  ++++  Y KPTP+Q  AIP  ++GRDL+  A+TGSGKT AF  P+   IM ++ ++   G     P+A+I+ PTREL+ QI  E
Sbjct:  327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ++  G+NVP P+ TF E    + +   IRR  +  P+ +Q  A P++++GRDL+A A+TGSGKT +FC P +  I  +  +    G     P+ LILAPTREL+ QI  EA
Sbjct:   98 MKIQGKNVPRPITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDG-----PIVLILAPTRELAVQIQTEA 203          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  553 TSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            TS  + PP V +F E DL  EL  +I+  KY +PTP+Q  AIP ++ G+D++  A+TGSGKTAAF  PI+  +           A+  Y  AL+LAPTREL+ QI +
Sbjct:   88 TSSSSSPPSVQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLY--------TAAQPYY--ALVLAPTRELAFQIKE 184          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_PICST (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Pichia stipitis GN=PRP28 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.446e-16
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR--EQYVQRPRGARTVY--PLALILAPTRELSSQIHDEA 879
            ED  + + G ++  P+ T+ E  +  +L ++ + + +Y++PTP+QR AIP+++  RD++  A+TGSGKT AF  P++S I+   + Y++        Y  PL LILAPTREL+ QI  EA
Sbjct:   40 EDYGITSKGGDIDNPLRTWNEASIPSKLLSIIVDKLEYLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLGLILAPTRELAQQITKEA 159          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  550 ETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            + SGE++P P+ +F ++     L ++L  N+    + +PTP+Q  AIPIS+ GRDL+ACA TGSGKT AF  P++  I++     +  G R      LI++PT EL+ QI  E
Sbjct:   99 KVSGEDIPLPIGSFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIR-----GLIISPTNELAVQIFQE 206          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_PHANO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Phaeosphaeria nodorum GN=PRP5 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 56/147 (38.10%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSG-----ENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            E  PF  D   E     AE T ++ +   D+  E  G     ++VP PV  +A++ L ++      R  Y +PT +Q  AIPI+ +GRDL+  A+TGSGKT AF  P+I  ++ ++ ++   G     P+ LILAPTRELS QI +E
Sbjct:  499 EYEPFRKDFYTEP----AEITQMSAEDVADLRHELDGIKVKPDDVPRPVTKWAQMGLLQQTMDVFTRVGYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADG-----PIGLILAPTRELSLQIVNE 636          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-16
Identity = 49/132 (37.12%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            E PF  A          + + +   G+ V  P+  F      E LN N+++  Y  PTP+Q   IP+ + GRD++A A TGSGKTAAF  P+I   + E             P ALIL PTREL+ QI  +A
Sbjct:  170 EHPFIVALRDDQIETLKQQLGISVQGQEVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIRALPEDKT----------PSALILTPTRELAIQIERQA 291          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_PICGU (ATP-dependent rRNA helicase RRP3 OS=Pichia guilliermondii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  547 VETSGE-----NVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            VET+ E     N     +TF+E++L  EL   I + KY KPTP+Q  AIP ++ G+D++  AQTGSGKTAAF  PI+  +      QRP         AL+LAPTREL+ QI +
Sbjct:   47 VETTSEASQDVNSEQQFHTFSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWE---AQRPY-------YALVLAPTRELAYQIKE 150          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX46_PONAB3.342e-1633.57Probable ATP-dependent RNA helicase DDX46 OS=Pongo... [more]
DDX46_MOUSE3.342e-1633.57Probable ATP-dependent RNA helicase DDX46 OS=Mus m... [more]
DDX46_HUMAN3.342e-1633.57Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
DBP2_CRYNE3.342e-1641.44ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
RRP3_LODEL4.365e-1644.86ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]
PRP28_PICST7.446e-1639.17Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
ROK1_DEBHA9.725e-1640.71ATP-dependent RNA helicase ROK1 OS=Debaryomyces ha... [more]
PRP5_PHANO9.725e-1638.10Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX59_RAT9.725e-1637.12Probable ATP-dependent RNA helicase DDX59 OS=Rattu... [more]
RRP3_PICGU1.270e-1544.74ATP-dependent rRNA helicase RRP3 OS=Pichia guillie... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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