CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.304e-33
Identity = 73/140 (52.14%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR--------GARTVYPLALILAPTRELSSQIHDEA 879
            EQ      NTGINF+ Y+DIPVE +G N PP +  F +ID+GE +  NI+  +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAAF  PI+S I  +   +  +        G R  YP++L+LAPTREL+ QI++EA
Sbjct:  145 EQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 284          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.304e-33
Identity = 73/140 (52.14%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR--------GARTVYPLALILAPTRELSSQIHDEA 879
            EQ      NTGINF+ Y+DIPVE +G N PP +  F++ID+GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAAF  PI+S I  +   +  +        G R  YP++L+LAPTREL+ QI++EA
Sbjct:  145 EQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 284          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX3L_MOUSE (Putative ATP-dependent RNA helicase Pl10 OS=Mus musculus GN=D1Pas1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.304e-33
Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI--------MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            EQ      NTGINF+ Y+DIPVE +G N PP + +F+++++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAAF  PI+S I        +R        G R  YP++L+LAPTREL+ QI++EA
Sbjct:  146 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEA 285          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX3X_MOUSE (ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 3.009e-33
Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI--------MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            EQ      NTGINF+ Y+DIPVE +G N PP + +F+++++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAAF  PI+S I        +R        G R  YP++L+LAPTREL+ QI++EA
Sbjct:  147 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 286          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX3X_HUMAN (ATP-dependent RNA helicase DDX3X OS=Homo sapiens GN=DDX3X PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 3.009e-33
Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI--------MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            EQ      NTGINF+ Y+DIPVE +G N PP + +F+++++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAAF  PI+S I        +R        G R  YP++L+LAPTREL+ QI++EA
Sbjct:  147 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 286          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 6.704e-33
Identity = 72/140 (51.43%), Postives = 93/140 (66.43%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGI--------MREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            EQ      NTGINF+ Y+DIPVE +G N PP +  F++I++GE +  NI   +Y +PTPVQ+HAIPI    RDLMACAQTGSGKTAAF  PI+S I        ++        G R  YP++L+LAPTREL+ QI++EA
Sbjct:  146 EQELFSGGNTGINFEKYDDIPVEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEA 285          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.327e-32
Identity = 94/275 (34.18%), Postives = 122/275 (44.36%), Query Frame = 1
Query:  160 MSTSWADSVSASENAAPASFNTNSLPRSTYVPPHLRNKQ--PASFEPPAPSREAHEPASGPR----------------------WGGGPR--PDFXXXXXXXXXXXXXXXXXXXXXXXXXXVREVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRP---------RGARTVYPLALILAPTRELSSQIHDEA 879
            M+ +  + +++  N+   +  +    +  YVPPHLRN+   PA+  P AP+     P   P                       WG  PR    F                                 GD +         + TGINFD Y DIPVE SG+ VP PV  F    +   L  N++  +Y  PTPVQ+++IPI   GRDLMACAQTGSGKT  F FPI+S +        P         R  + VYP AL+LAPTREL SQIH+EA
Sbjct:    1 MAATDVNGLASQMNSVNLNGASQKPQKPAYVPPHLRNRAAPPAAVPPAAPAAYRPSPTGLPTPATTPPTRHIVPAAVAEDDVGGWGAQPRVRKTFEHGAPPGFGSWKNGQHVVGARNTRMEKEMYGEVGDGLH--------QATGINFDKYADIPVEVSGKGVPEPVTEFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEA 267          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_YARLI (ATP-dependent RNA helicase DED1 OS=Yarrowia lipolytica GN=DED1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.675e-32
Identity = 71/131 (54.20%), Postives = 89/131 (67.94%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISG--IMREQYVQRPRGAR----TVYPLALILAPTRELSSQIHDEA 879
            ++TGINFD Y++IPVE +G +VP P+N F    L E L  NI+  +Y KPTPVQ++++PI  AGRDLMACAQTGSGKT  F FP++S           +P G R      YP AL+LAPTREL SQI+DEA
Sbjct:  134 QSTGINFDNYDEIPVEATGNDVPEPINAFTSPPLEEHLLTNIKLARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGPRHMHKKAYPTALVLAPTRELVSQIYDEA 264          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.412e-32
Identity = 74/132 (56.06%), Postives = 88/132 (66.67%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-------RTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF+ Y+DIPVE SG+NVP PV TF+   L   L  NI+  +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S          P  A       R  YP ALILAPTREL SQI+DEA
Sbjct:  168 QHTGINFEKYDDIPVEASGDNVPEPVLTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEA 299          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 74/132 (56.06%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-------RTVYPLALILAPTRELSSQIHDEA 879
            +NTGINF  Y+DIPVE SG +VP PVNTF    L + L  NI   +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P  A       R  YP +LILAPTREL SQI DEA
Sbjct:  160 QNTGINFANYDDIPVEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEA 291          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX3Y_PANTR2.304e-3352.14ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]
DDX3Y_HUMAN2.304e-3352.14ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DDX3L_MOUSE2.304e-3351.43Putative ATP-dependent RNA helicase Pl10 OS=Mus mu... [more]
DDX3X_MOUSE3.009e-3351.43ATP-dependent RNA helicase DDX3X OS=Mus musculus G... [more]
DDX3X_HUMAN3.009e-3351.43ATP-dependent RNA helicase DDX3X OS=Homo sapiens G... [more]
DDX3Y_MOUSE6.704e-3351.43ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]
DED1_CRYNE3.327e-3234.18ATP-dependent RNA helicase ded1 OS=Cryptococcus ne... [more]
DED1_YARLI5.675e-3254.20ATP-dependent RNA helicase DED1 OS=Yarrowia lipoly... [more]
DED1_NEUCR7.412e-3256.06ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DED1_EMENI9.680e-3256.06ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
back to top