CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_ASPNC (ATP-dependent RNA helicase ded1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ded1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.398e-30
Identity = 73/134 (54.48%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA---------RTVYPLALILAPTRELSSQIHDEA 879
            +NTGINF  Y+DIPVE SG +VP PVN F    L + L  NI+   Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P  A         R  YP +LILAPTREL SQI DEA
Sbjct:  161 QNTGINFANYDDIPVEASGHDVPEPVNAFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEA 294          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_MAGGR (ATP-dependent RNA helicase DED1 OS=Magnaporthe grisea GN=DED1 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.384e-30
Identity = 71/134 (52.99%), Postives = 89/134 (66.42%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMR------EQYVQRPRG---ARTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF+ Y+DIPVE SG +VP PV TF+   L + L  NI   +Y  PTPVQ++++PI + GRDLMACAQTGSGKT  F FPI+S   +          Q P G    R  YP +LILAPTREL SQI+DE+
Sbjct:  161 QHTGINFEKYDDIPVEASGHDVPEPVYTFSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILAPTRELVSQIYDES 294          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR---------GARTVYPLALILAPTRELSSQIHDEA 879
            +++GINFD Y+DIPVE SG+ VP P+ +F    L E L  NI   ++ KPTPVQ++++PI   GRDLMACAQTGSGKT  F FP++S    E Y+  P           +  V+P  L++APTREL SQI+DEA
Sbjct:  142 QSSGINFDNYDDIPVEASGDGVPDPITSFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLS----ESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEA 271          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30
Identity = 72/134 (53.73%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA---------RTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF  Y+DIPVE SG +VP PVN F    L + L  NI+  +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P  A         R  YP +LILAPTREL SQI DEA
Sbjct:  164 QSTGINFANYDDIPVEASGHDVPEPVNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEA 297          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_ASPFU (ATP-dependent RNA helicase ded1 OS=Aspergillus fumigatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.114e-30
Identity = 72/134 (53.73%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA---------RTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF  Y+DIPVE SG +VP PVN F    L + L  NI+  +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P  A         R  YP +LILAPTREL SQI DEA
Sbjct:  162 QSTGINFANYDDIPVEASGHDVPEPVNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEA 295          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP1_YEAS7 (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.067e-30
Identity = 88/234 (37.61%), Postives = 116/234 (49.57%), Query Frame = 1
Query:  238 RSTYVPPHLRNKQPASFEPPAPSREAHEPAS-----GPRWGGGPRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXVREVN------PFGDDIDAE----QPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-----RTVYPLALILAPTRELSSQIHDEA 879
            +S+YVPPHLR++   SFE   P +E             R  G     F                           R VN      P    ++AE        +  ++GI FD Y+DIPV+ SG++VP P+  F+   L E L  NI+   + KPTPVQ+++IPI   GRDLMACAQTGSGKT  F FP+ + + R      P  A     R  YP AL+LAPTREL++QI +EA
Sbjct:   24 KSSYVPPHLRSRGKPSFERSTPKQEDKVTGGDFFRRAGRQTGNNGGFFGFSKERNGGTSANYNRGGSSNYKSSGNRWVNGKHIPGPKNAKLEAELFGVHEDPDYHSSGIKFDNYDDIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_COCIM (ATP-dependent RNA helicase DED1 OS=Coccidioides immitis GN=DED1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.312e-30
Identity = 71/134 (52.99%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR---------GARTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF  Y+DIPVE SG +VP PV TF    L + L  NI+   Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P            R  YP +LILAPTREL SQI+DEA
Sbjct:  149 QHTGINFANYDDIPVEASGHDVPEPVTTFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEA 282          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.937e-30
Identity = 72/139 (51.80%), Postives = 92/139 (66.19%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS-----GIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            D E        +GINFD Y++I V+ +G++VPP + TF E +L E L  N+ R  YVK TPVQ+H+IPI +AGRDLMACAQTGSGKTAAF  PI+S     GI   QY+Q         P A+I+APTREL +QI+ +A
Sbjct:  239 DGEDNIFRQYQSGINFDKYDEILVDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQE------PEAIIIAPTRELINQIYLDA 371          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.060e-30
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-------RTVYPLALILAPTRELSSQIHDEA 879
            + TGINF+ Y+DIPVE SG++VP PV  F    L + L  NI    Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P  A       R  YP +LILAPTREL SQI+DE+
Sbjct:  160 QQTGINFEKYDDIPVEASGQDVPEPVLKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAGSFGRTRKAYPTSLILAPTRELVSQIYDES 291          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.183e-29
Identity = 74/142 (52.11%), Postives = 87/142 (61.27%), Query Frame = 1
Query:  475 IDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-------RTVYPLALILAPTRELSSQIHDEA 879
            + AE P    ++TGINF+ Y+DIPVE SG +VP PV+ F    L E L  NI    Y  PTPVQ+++IPI   GRDLMACAQTGSGKT  F FPI+S          P  A       R  YP +LILAPTREL SQI DE+
Sbjct:  152 VTAEDP--SKQHTGINFEKYDDIPVEASGTDVPEPVHQFTTPPLDEHLCRNIELAHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQFGRQRKAYPTSLILAPTRELVSQIFDES 291          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DED1_ASPNC1.398e-3054.48ATP-dependent RNA helicase ded1 OS=Aspergillus nig... [more]
DED1_MAGGR2.384e-3052.99ATP-dependent RNA helicase DED1 OS=Magnaporthe gri... [more]
DED1_PICST3.114e-3050.00ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]
DED1_NEOFI3.114e-3053.73ATP-dependent RNA helicase ded1 OS=Neosartorya fis... [more]
DED1_ASPFU3.114e-3053.73ATP-dependent RNA helicase ded1 OS=Aspergillus fum... [more]
DBP1_YEAS74.067e-3037.61ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
DED1_COCIM5.312e-3052.99ATP-dependent RNA helicase DED1 OS=Coccidioides im... [more]
DDX4_XENLA6.937e-3051.80Probable ATP-dependent RNA helicase DDX4 OS=Xenopu... [more]
DED1_BOTFB9.060e-3053.03ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DED1_GIBZE1.183e-2952.11ATP-dependent RNA helicase DED1 OS=Gibberella zeae... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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