CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP1_YEAST (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae GN=DBP1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.545e-29
Identity = 87/234 (37.18%), Postives = 116/234 (49.57%), Query Frame = 1
Query:  238 RSTYVPPHLRNKQPASFEPPAPSREAHEPAS-----GPRWGGGPRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXVREVN------PFGDDIDAE----QPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-----RTVYPLALILAPTRELSSQIHDEA 879
            +S+YVPPHLR++   SFE   P +E             R  G     F                           R VN      P    ++AE        +  ++GI FD Y++IPV+ SG++VP P+  F+   L E L  NI+   + KPTPVQ+++IPI   GRDLMACAQTGSGKT  F FP+ + + R      P  A     R  YP AL+LAPTREL++QI +EA
Sbjct:   24 KSSYVPPHLRSRGKPSFERSTPKQEDKVTGGDFFRRAGRQTGNNGGFFGFSKERNGGTSANYNRGGSSNYKSSGNRWVNGKHIPGPKNAKLEAELFGVHDDPDYHSSGIKFDNYDNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.018e-29
Identity = 70/132 (53.03%), Postives = 84/132 (63.64%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGA-------RTVYPLALILAPTRELSSQIHDEA 879
            + TGINF+ Y+DIPVE SG++VP PV  F    L + L  NI    Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S   +      P  A       R  YP +LILAPTREL SQI DE+
Sbjct:  160 QQTGINFEKYDDIPVEASGQDVPEPVLKFTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAGSFGRTRKAYPTSLILAPTRELVSQIFDES 291          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_CHAGB (ATP-dependent RNA helicase DED1 OS=Chaetomium globosum GN=DED1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.018e-29
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPR----------GARTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF+ Y+DIPV  SG +VP PV TF+   L   L  NI   +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FP    IM + + Q P             R  YP ALILAPTREL SQI++EA
Sbjct:  172 QHTGINFEKYDDIPVNPSGRDVPEPVLTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFP----IMHQSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIYEEA 302          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_YEAST (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae GN=DED1 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.443e-29
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG-----ARTVYPLALILAPTRELSSQIHDEA 879
            +++GINFD Y+DIPV+ SG++VP P+  F    L   L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT  F FP++S   +     +P        R  YP A+I+APTREL++QI DEA
Sbjct:  116 QSSGINFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEA 245          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_YEAS7 (ATP-dependent RNA helicase DED1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DED1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.443e-29
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG-----ARTVYPLALILAPTRELSSQIHDEA 879
            +++GINFD Y+DIPV+ SG++VP P+  F    L   L  NI+  ++ KPTPVQ++++PI   GRDLMACAQTGSGKT  F FP++S   +     +P        R  YP A+I+APTREL++QI DEA
Sbjct:  116 QSSGINFDNYDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEA 245          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.496e-29
Identity = 67/123 (54.47%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIM---------REQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            DIPVE SGE+VPPP + F    L E +  N+ RC Y  PTPVQR+++PI++AGRDLMACAQTGSGKTAAFC P++SG++         RE+       A+   P AL+LAPTREL++QI++EA
Sbjct:   69 DIPVEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAK---PRALVLAPTRELAAQINEEA 188          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.496e-29
Identity = 69/132 (52.27%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRG-------ARTVYPLALILAPTRELSSQIHDEA 879
            + TGINF+ Y+DIPVE SG+ VP PV  F    L + L  NI    Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI++   +      P          R  YP +LILAPTREL SQI DEA
Sbjct:  175 QQTGINFEKYDDIPVEASGQGVPEPVTRFTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEA 306          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_VANPO (ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.873e-29
Identity = 70/148 (47.30%), Postives = 91/148 (61.49%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGAR-----TVYPLALILAPTRELSSQIHDEA 879
            EV  FG   D +      +++GINFD Y+DIPV+ SG +VP  +  F    L   L  NI   ++ KPTPVQ++++PI   GRDLMACAQTGSGKT  F FP++S   +      P  AR       YP AL+LAPTREL++QI+DEA
Sbjct:  121 EVQLFGTPEDPQ-----FQSSGINFDNYDDIPVDASGTDVPEAITEFTSPPLDALLLENIILARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLSESFKNGPSPMPESARKSFVKKAYPTALVLAPTRELATQIYDEA 263          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX4_RANLE (Probable ATP-dependent RNA helicase DDX4 OS=Rana lessonae GN=ddx4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  511 TGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            TGINFD Y+DI VE SG +VPP + TF E +L + L  N+ +  YVK TP+Q+H+IPI VAGRDLMACAQTGSGKTAAF  PI++ +M  + V+         P A+I+APTREL +QI+ +A
Sbjct:  262 TGINFDKYDDIVVEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLM-VKGVESSAFQTLKEPEAIIVAPTRELINQIYLDA 383          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DED1_AJECN (ATP-dependent RNA helicase DED1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DED1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.308e-28
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  505 ENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIM--REQYVQRPRG---ARTVYPLALILAPTRELSSQIHDEA 879
            ++TGINF  Y+ IPVE SG +VP  +  F    L E L  NI   +Y  PTPVQ+++IPI + GRDLMACAQTGSGKT  F FPI+S  +  R    +  RG    +  YP ALIL PTREL SQI+DEA
Sbjct:  177 QHTGINFSNYDSIPVEASGHDVPESITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEA 306          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DBP1_YEAST1.545e-2937.18ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
DED1_SCLS12.018e-2953.03ATP-dependent RNA helicase ded1 OS=Sclerotinia scl... [more]
DED1_CHAGB2.018e-2952.59ATP-dependent RNA helicase DED1 OS=Chaetomium glob... [more]
DED1_YEAST3.443e-2949.23ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
DED1_YEAS73.443e-2949.23ATP-dependent RNA helicase DED1 OS=Saccharomyces c... [more]
RH52A_ORYSJ4.496e-2954.47DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
DED1_PHANO4.496e-2952.27ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DED1_VANPO5.873e-2947.30ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma... [more]
DDX4_RANLE1.002e-2855.28Probable ATP-dependent RNA helicase DDX4 OS=Rana l... [more]
DED1_AJECN1.308e-2853.08ATP-dependent RNA helicase DED1 OS=Ajellomyces cap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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