CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPCL (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus clavatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.735e-17
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++ E  L + L   + R  Y +PTP+QR AIPI++  RDL+  A TGSGKTA+F  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  350 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 464          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_COCIM (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides immitis GN=PRP28 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G ++P P+ ++ E  L + L   I +  Y  P+P+QR AIPI++  RDL+  A TGSGKTAAF  P++  I     +      ++  P A+ILAPTREL+ QI +EA
Sbjct:  361 EDFNISTKGGSIPNPMRSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEA 475          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPOR (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus oryzae GN=prp28 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.796e-17
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++ E  L + L   + +  Y +PTP+QR AIPI++  RDL+  A TGSGKTA+F  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  351 EDFNISTKGGSVPNPMRSWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 465          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  +   G  VP P+  ++E  LG EL   + +  Y +P+P+Q  +IP+ +  RD++  A+TGSGKTAAF  P++S I R   +     A    P A+++APTREL+ QI +E
Sbjct:  299 EDFNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEG--PYAVVMAPTRELAQQIEEE 410          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_ASHGO (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ashbya gossypii GN=PRP5 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.500e-16
Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEEL-NLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            V+  G + P P+  ++++ L   + NL  R  ++  PTP+Q  AIP  ++GRD++  ++TGSGKT +F  P    ++R+   QRP G     PL LIL+PTREL+ QIH+E
Sbjct:  224 VQVRGRDCPRPILKWSQLGLNSGIMNLLTRELEFTVPTPIQAQAIPAIMSGRDVIGISKTGSGKTVSFILP----LLRQIKAQRPLGGDETGPLGLILSPTRELALQIHEE 330          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++ E  L + L   + +  Y +PTP+QR AIPI++  RDL+  A TGSGKTA+F  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  348 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 462          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            ED  + T G +VP P+ ++ E  L + L   + +  Y +PTP+QR AIPI++  RDL+  A TGSGKTA+F  P++  I     +      +   P A++LAPTREL+ QI  EA
Sbjct:  348 EDFNISTKGGSVPNPMRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEA 462          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.960e-16
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 1
Query:  526 DAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            D   ++ V+ +G++ P P+ ++A+  L E+++L +++ +Y KPT +Q   IP  + GRDL+  A+TGSGKT AF  P+   I+ +     P+ A     +ALI++PTREL+ QIH E
Sbjct:  490 DFRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQ-----PKSAPGEGMIALIMSPTRELALQIHVE 601          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  +   G  +P P+ ++ E  L  EL   + R  Y KP+P+Q  AIP+ +  RD++  A+TGSGKTAAF  P+++ I R   +       T  P A+++APTREL+ QI +E
Sbjct:  297 EDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEEN--ETEGPYAVVMAPTRELAQQIEEE 408          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQP-FAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            E  PF  +   E P  A+     +N    E   +   G+  P P+ ++ +  +  ++  ++++  Y KPTP+Q  AIP  ++GRDL+  A+TGSGKT AF  P+   IM ++ ++   G     P+A+I+ PTREL+ QI  E
Sbjct:  327 EYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEG-----PIAVIMTPTRELALQITKE 464          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
PRP28_ASPCL6.735e-1741.74Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_COCIM8.796e-1741.74Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_ASPOR8.796e-1740.87Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
RH21_ORYSJ1.500e-1639.47DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
PRP5_ASHGO1.500e-1640.54Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_NEOFI1.960e-1640.87Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPFU1.960e-1640.87Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
DDX46_DICDI1.960e-1638.46ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
RH21_ARATH3.342e-1639.47DEAD-box ATP-dependent RNA helicase 21 OS=Arabidop... [more]
DDX46_RAT3.342e-1633.57Probable ATP-dependent RNA helicase DDX46 OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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