CK935179

Overview
NameCK935179
Unique NameCK935179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:1..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935179 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.434e-13
Identity = 54/201 (26.87%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  255 DLRPKSKTRPVSDVVPTIDLSGVDS-DDLRPTIVEKIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEP-------ELEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDP 833
            D RPK      S+ +P I L+G+D  +  R  I +KI  A  + G FQ+V+HG+  E++  M    + F   P E K         KG   +S+    H +  + +D  +I    + P          + PE  R+   +++  +                  T+ L +      + +V ++YP CPQPDLT+G+  HTDP
Sbjct:   25 DERPKVAYNDFSNEIPIISLAGIDEVEGRRGEICKKIVAACEDWGIFQIVDHGVDAELISEMTGLAREFFALPSEEKLRFDMSGGKKGGFIVSS----HLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDP 221          
BLAST of CK935179 vs. ExPASy Swiss-Prot
Match: FL3H_VITVI (Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis vinifera GN=F3H PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 56/203 (27.59%), Postives = 83/203 (40.89%), Query Frame = 3
Query:  255 DLRPKSKTRPVSDVVPTIDLSGVDSDDLRPTIVE---KIACASRELGFFQVVNHGIGVEVLERMVRAIKGFHEQPPEIKAPVYRRENTKGVSYISNIDLFHSKAASWRDTLQIRLGLTEP-------ELEEVPEICRKEAVEWNHHVKQXXXXXXXXXXXXXXXKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDP 833
            D RPK      S+ +P I L+  +S  L   + E   KI  A  + G FQVVNHG+   ++  M R  + F   PPE           KG   +S+    H +  + +D  +I    + P          + PE  R    E++  +                   D L        + +V ++YP CPQPDLT+G+  HTDP
Sbjct:   24 DERPKVAYNDFSNEIPVISLTK-ESMKLAAVVDEICRKIVEACEDWGIFQVVNHGVDSNLISEMTRLAREFFALPPEENVRFDMSGGKKGGFIVSS----HLQGEAVQDWREIVTYFSYPLRTRDYSRWPDKPEGWRSVTQEYSEKLMGLACKLLEVLSEAMDLDKDALTNACVDMDQKVVVNFYPQCPQPDLTLGLKRHTDP 221          
The following BLAST results are available for this feature:
BLAST of CK935179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
FL3H_MALDO2.434e-1326.87Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FL3H_VITVI8.658e-1127.59Naringenin,2-oxoglutarate 3-dioxygenase OS=Vitis v... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_H10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935179 ID=CK935179; Name=CK935179; organism=Citrus sinensis; type=EST; length=833bp
AGGGGTTAAGTAATTGTATTACCAAACTAGTGAAACAAAACAGAAAAATG
CTAAAACCACTCCATTCATTTGTTTCAACTCAAGATATCAAATATCAATT
AACAAGAAGAGCTACAATCATGAGCCTAGAATCATACGACAGGGCCAAAG
AAGTGAAACGATTCGACGAGTCCAAAGTCGGGGTCAAAGGTTTAGTTGAC
TTGGGCGTCACCGCCATCCCCCGCTTTTTCATCCACCCACCCGCCACTCT
TGCCGATCTCAGACCCAAGTCAAAGACCCGGCCCGTCTCTGATGTAGTCC
CCACCATCGATTTATCGGGCGTTGACTCGGACGATCTGCGGCCGACGATT
GTGGAAAAGATAGCATGTGCCTCGCGGGAGCTGGGGTTCTTTCAGGTTGT
GAATCACGGCATCGGAGTTGAGGTCTTGGAGCGTATGGTTCGGGCCATTA
AAGGGTTTCATGAACAGCCGCCGGAGATCAAGGCGCCGGTGTATCGTAGG
GAGAACACCAAAGGCGTGTCTTACATTTCCAACATCGATTTGTTTCACTC
TAAAGCTGCCAGCTGGAGGGACACACTGCAGATAAGGCTAGGTCTGACGG
AACCAGAGCTTGAAGAAGTTCCTGAAATATGTAGGAAAGAGGCAGTCGAG
TGGAACCACCATGTAAAACAGCTCGGAGAGCTTTTGTTTGGGCTGCTGTG
TGAAGGTTTGGGGTTGAAAACCGATAGGTTGAAGGAAAAGACCTTCCTGG
AAGGGAGGATGATGGTGGGCCATTATTATCCCTACTGTCCGCAGCCTGAT
CTGACAGTGGGGATCACATCTCATACTGATCCA
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