CK935208

Overview
NameCK935208
Unique NameCK935208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1774 contig Csv1_Contig1774:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935208 vs. ExPASy Swiss-Prot
Match: DI194_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 59/187 (31.55%), Postives = 96/187 (51.34%), Query Frame = 2 
Query:  239 EYPCPFCSEDFDLVGLCCHIDEEHPVEAKSGVCPVCVTRVTMDMVDHITTQHGNI--SNSWHKLKLHKGNSNSTISSLRKELQNAHFQSLL--AGXXXXXXXXXXXXDPWL-SFIYNMPTADEPESIQ-PALSTGEGAEDKSSCEKTFETNAQQSSLSNEDHLEK----ANRSNFAQGLLFSTIMDD 769
            ++PCP+C ED D+  LC H+++EHP E+K   CPVC  R++ D++DHIT QH  +      H+L+     SN  +S   ++LQ  + + LL  +             D  L S + N+ +++  ++ +  AL+  E    K +        +  S+LS E+   +    A RS+F Q LL ST+ DD
Sbjct:   59 DFPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHHRLRRVAVPSNHALSLGGRDLQETYLKVLLGNSSRSSGTNAASSVTDSLLSSLVLNLSSSEAEDTAKFSALAVVENNWFKRTLPSKTWKASSDSNLSQEERERRRRRAAVRSSFVQHLLVSTLFDD 245
The following BLAST results are available for this feature:
BLAST of CK935208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DI194_ORYSJ1.549e-1831.55Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935208 ID=CK935208; Name=CK935208; organism=Citrus sinensis; type=EST; length=862bp
GGGGGAGCGCTTAAAATCAAAGGGGAAGTTTACTCGCTATTTTATGCTAT
CATCTGAATTGGGTTTTGTTTGTGAATTTTAATTAACAGAAGATTCAATG
GATTACAGTAGATACTTTGGTCTTTCTACTTCATCATCAAGGAACTATCA
GTCAACTCTCAAGTCTCAGTTTGCGGATTTTTGCATTGATTTTGAGGATA
TAGAAGAAGATGATTATGAGGAAGTGAAAGGAGAGTATGAGTATCCATGC
CCATTTTGTTCGGAGGATTTTGATTTAGTTGGATTATGCTGTCATATTGA
TGAGGAACATCCTGTTGAAGCAAAGTCGGGGGTATGCCCTGTTTGCGTTA
CAAGGGTAACGATGGACATGGTTGATCACATAACAACACAACATGGAAAC
ATTTCAAATAGTTGGCACAAATTAAAACTTCATAAAGGCAACTCTAATTC
AACTATATCATCTTTGAGGAAAGAGTTGCAAAATGCACATTTTCAATCTC
TTCTTGCAGGGTCATCCTCTTCTGTTTCTTCCTCCAAAAAGACATCTGAT
CCATGGCTATCATTTATTTACAACATGCCTACTGCTGACGAGCCTGAAAG
CATACAGCCTGCTTTGAGCACTGGAGAAGGAGCAGAAGATAAAAGCTCGT
GTGAGAAAACATTTGAAACAAATGCTCAGCAATCTTCCTTGTCAAACGAG
GACCATTTGGAGAAGGCAAACAGGAGCAATTTTGCACAGGGACTATTATT
TTCTACCATCATGGATGATGGCTTATAAATGATATCAGTGGGGCTGTGGT
TGTCAACTTTAAATTCCGAAGACTAGTTCACAGTTGACATTATCTTATTC
GTATGTGCCAAT
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