CK935221

Overview
NameCK935221
Unique NameCK935221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH8102) GN=fabZ PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.211e-33
Identity = 75/127 (59.06%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGIAKMEGK 840
            V+   QI  +LPHR+PF LVDRVI + PGVSA  IKNVT+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD LV+   L+ L +KRFG  K E K
Sbjct:   15 VLTSEQIAGLLPHRYPFALVDRVIAHEPGVSATGIKNVTVNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLVIHCELLSLKRKRFGKVKAEAK 139          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: LPXZ_CHLTE (Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidum GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.075e-32
Identity = 64/127 (50.39%), Postives = 90/127 (70.87%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            + DIN I++ILPHR+PFLL+D+++E+      V+IKNVT+N+ FF GHFP  PIMPGVL++EAMAQ GG++ML  +        FF GIDK RFRKPV+ GDTLV+   +  +++   + + + KAY
Sbjct:  323 IFDINAIQNILPHRYPFLLIDKIVEFKLDEKIVSIKNVTMNEPFFQGHFPGNPIMPGVLIIEAMAQTGGIMMLNGKENIKESVVFFMGIDKARFRKPVLPGDTLVIEAVMTNMRRT--VCQFDAKAY 447          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_SYNP2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=fabZ PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.951e-32
Identity = 67/122 (54.92%), Postives = 92/122 (75.41%), Query Frame = 1
Query:  475 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFF-FAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEG 837
            + +I+ +LPHR+PF LVDR++EY PG  AV +KN+T N+  F GH P  PIMPGVLMVEAMAQVGG ++ Q  + G  ++FF FAGIDKVRFR+PV+ GD L+M + ++ ++ +  IAKM+G
Sbjct:   15 VEEIQKLLPHRYPFSLVDRILEYIPGEKAVGLKNITFNEPHFQGHIPNHPIMPGVLMVEAMAQVGGFILTQ--MPGMEDSFFAFAGIDKVRFRRPVVPGDQLIMTVEVITVKAK-RIAKMKG 133          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH7803) GN=fabZ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-RFGIAKME 834
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVAIKNVT+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L +   L+ L++ RFG  K E
Sbjct:    6 VLNAEQIMGLLPHRYPFALVDRVLEHVPGEKAVAIKNVTLNEPQFQGHFPDRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRISCELLSLKRQRFGKVKAE 128          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CARHZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fabZ PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.549e-31
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGK 840
            + DI +I +ILPHR+PFLLVD+++E  PG  AV IKNVTIN+ FF GHFP RPIMPGVL++EAMAQVG + +L  E    +    FAGID  RFRKPV+ GD +V  + L+K++   G A+  GK
Sbjct:    5 IKDITEIMNILPHRYPFLLVDKILEVVPGEKAVGIKNVTINEPFFQGHFPGRPIMPGVLLLEAMAQVGAVAILTDERYAGKLP-MFAGIDGARFRKPVLPGDQVVFEVELLKIKGSLGKARGSGK 128          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_DESDG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfovibrio desulfuricans (strain G20) GN=fabZ PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.022e-31
Identity = 67/129 (51.94%), Postives = 92/129 (71.32%), Query Frame = 1
Query:  463 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGG-LVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            +++DI QI  +LPHR+PFLLVDRV++Y PG    A+KNVT+N+ FF GHFP+ P+MPGVL++EA+AQ GG LV+   +     + F F G+++VRFRKPV  GD L +   L  L+ +  + KMEGKAY
Sbjct:    7 SILDIRQILGLLPHRYPFLLVDRVLDYTPGECITAVKNVTMNEPFFQGHFPDVPVMPGVLIMEALAQAGGILVVKSTDTSVEGKLFLFTGMERVRFRKPVYPGDRLELHCRL--LRHKLKLWKMEGKAY 133          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: LPXZ_PORGI (Bifunctional enzyme lpxC/fabZ OS=Porphyromonas gingivalis GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.884e-31
Identity = 66/127 (51.97%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            +MDIN+I+++LPHR+PFLLVD++IE  P    V +K+V+ N+ FFPGHFP  P+MPGVL VEAMAQVGGL++L      S  + +F  IDKV+FR+ V+ GDTLV ++ ++  + R G+A M G A+
Sbjct:  318 IMDINRIKELLPHRYPFLLVDKIIEVGPDY-IVGVKSVSGNEPFFPGHFPGEPVMPGVLQVEAMAQVGGLLVLNTLTEPSSYSTYFLMIDKVKFRRKVVPGDTLVFKLRMIS-EIRRGVANMRGLAF 442          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_PROMP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.884e-31
Identity = 70/124 (56.45%), Postives = 97/124 (78.23%), Query Frame = 1
Query:  481 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-RFGIAKMEGKAY 846
            +I  +LPHRFPF L+DRVIE+ PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VEAMAQVGG+++ Q P++   +  F FAGI+ V+FR+PV+ GD LV+   L+ +++ RFG  K++G+A+
Sbjct:   16 EILGLLPHRFPFALIDRVIEHVPGKKAVALKNVTINEPQFQGHFPERPLMPGVLIVEAMAQVGGIIVTQMPDL--PKGLFVFAGINNVKFRRPVVPGDQLVITCELLSIKRQRFG--KVKGEAH 135          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9311) GN=fabZ PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.685e-31
Identity = 72/125 (57.60%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGIAKME 834
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVA+KNVT N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L +   L+ L +KRFG  K E
Sbjct:   13 VLNAEQIMGLLPHRYPFALVDRVLEHVPGERAVALKNVTFNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLRITCELLSLKRKRFGKVKAE 135          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_ACAM1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acaryochloris marina (strain MBIC 11017) GN=fabZ PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.685e-31
Identity = 70/131 (53.44%), Postives = 93/131 (70.99%), Query Frame = 1
Query:  463 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKL-QKRFGI----AKMEGK 840
            T   I +I+++LPHR+PFLLVDR+I+Y     AV IKNVT+N+ FF GHFP RP+MPGVL+VEAMAQVGG+V+ Q     S + F F GIDKVR R+ V+ GD LV+    + L +KRF +    A+++GK
Sbjct:   13 TTFMIEEIQELLPHRYPFLLVDRIIDYKESERAVGIKNVTMNEEFFQGHFPGRPLMPGVLIVEAMAQVGGIVLAQLPDIPSGKLFVFTGIDKVRIRRSVVPGDQLVITAEFLSLKRKRFAMMSTKAEVDGK 143          
The following BLAST results are available for this feature:
BLAST of CK935221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_SYNPX8.211e-3359.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_CHLTE4.075e-3250.39Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidu... [more]
FABZ_SYNP26.951e-3254.92(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPW1.549e-3157.60(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CARHZ1.549e-3155.20(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESDG2.022e-3151.94(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_PORGI5.884e-3151.97Bifunctional enzyme lpxC/fabZ OS=Porphyromonas gin... [more]
FABZ_PROMP5.884e-3156.45(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS37.685e-3157.60(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACAM17.685e-3153.44(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935221 ID=CK935221; Name=CK935221; organism=Citrus sinensis; type=EST; length=847bp
GGGGGCTTTACACAGTACAACTTTTGCCAACACCCAATCCCATCATTGGT
CTCTCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTACCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAGACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAAGTAAGATTCAGG
AAACCAGTGATTGCAGGTGACACTTTGGTCATGAGAATGACACTTGTCAA
GCTACAGAAACGCTTCGGAATAGCAAAGATGGAAGGGAAAGCTTATG
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