CK935221

Overview
NameCK935221
Unique NameCK935221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_PROM9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain MIT 9312) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 68/124 (54.84%), Postives = 96/124 (77.42%), Query Frame = 1
Query:  481 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-RFGIAKMEGKAY 846
            +I  +LPHR+PF LVD+VIE  PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q P++   +  F FAGI+ V+FRKPV+ GD L++   L+ +++ RFG  K++G+A+
Sbjct:   16 KILGLLPHRYPFALVDKVIENIPGERAVAVKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMPDL--PKGLFVFAGINNVKFRKPVLPGDQLIITCDLLSIKRQRFG--KVKGEAH 135          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_PELTS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            ++DINQI++I+PHR+PFLLVDR++    G  AV +KNV+ N+ +F GHFP  P+MPGVL++EAMAQVG + +L+ PE  G     FFAGID+ RFR+ V+ GD L + + L KL  R  + K  G AY
Sbjct:    1 MLDINQIKEIIPHRYPFLLVDRILSVEDGRKAVGLKNVSANEPYFQGHFPGYPVMPGVLIIEAMAQVGAVAVLRLPEFAGKMA--FFAGIDRARFRRQVVPGDQLRIEVELQKL--RGTVGKARGAAY 124          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_GEOUR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter uraniireducens (strain Rf4) GN=fabZ PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  469 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENF-FFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            MDIN+I  ILPHRFPFL+VDR++E  PG   V +KNVTIN+ FF GHFP  P+MPGVL+VEAMAQV G++        +R+   +F  ID  +FRKPV  GD L  R+ +  +  R GI  + GKAY
Sbjct:    1 MDINEIMKILPHRFPFLMVDRIVEMEPGKRCVGLKNVTINEPFFQGHFPGHPVMPGVLIVEAMAQVAGIMAYLASDDETRKKVSYFMAIDNAKFRKPVFPGDQL--RIEVETIFSRRGIWSVAGKAY 125          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_GEOMG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  463 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENF-FFAGIDKVRFRKPVIAGDTL 777
            TV DIN+I  ILPHR+PFLLVDR++E+ PG   V IKNVTIN+ FF GHFP  PIMPGVL+VEAMAQVGG++         R    +FA ID V+FRKPV+ GD L
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEHVPGERIVGIKNVTINEPFFQGHFPGHPIMPGVLIVEAMAQVGGILAYMASDDEVRNKVCYFASIDNVKFRKPVLPGDQL 108          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_GEOKA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacillus kaustophilus GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 67/129 (51.94%), Postives = 92/129 (71.32%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVK----LQKRFGIAKMEGK 840
            ++DI QI+ I+PHR+PFLLVDR++E   G  AV IKNV+ N++FF GHFPE P+MPGVL+VEA+AQVG +V+LQ E    R   FFAGID  RF+K V  GD L + + +++    + K  GIA ++G+
Sbjct:    1 MLDIQQIQSIIPHRYPFLLVDRILEIEEGKRAVGIKNVSANESFFAGHFPEYPVMPGVLIVEALAQVGAVVLLQSEENRGR-LAFFAGIDNCRFKKQVKPGDQLRLEVEILRARGAIGKGKGIATVDGE 128          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_ANATD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=fabZ PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  472 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAK 828
            +I++I +I+PHR+PFLLVDR+IE   G  A  IKNVTIN+ FF GHFP  P+MPGVL+VEAMAQVG + ML  E    +   FFAGIDKVRF+K V  GD LV+   L+ L+   G AK
Sbjct:    3 NIDKILEIIPHRYPFLLVDRIIEVEEGKRAKGIKNVTINEPFFQGHFPSNPVMPGVLIVEAMAQVGAVAMLLKEEFKGKTP-FFAGIDKVRFKKVVKPGDVLVIETELISLKGSIGKAK 120          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: LPXZ_BACTN (Bifunctional enzyme lpxC/fabZ OS=Bacteroides thetaiotaomicron GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 66/127 (51.97%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAKMEGKAY 846
            VMD+N+IR++LPHR+PF LVD+VIE       V IKN+T N+ FF GHFP+ P+MPGVL +EAMAQVGGL++L       R + +F  ID V+FR+ V+ GDTL+ R+ L+   +R GI+ M+G A+
Sbjct:  318 VMDVNRIRELLPHRYPFQLVDKVIEMGASY-IVGIKNITANEPFFQGHFPQEPVMPGVLQIEAMAQVGGLLVLNSVDEPERYSTYFMKIDGVKFRQKVVPGDTLLFRVELLAPIRR-GISTMKGYAF 442          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_PROMS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus (strain AS9601) GN=fabZ PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.893e-29
Identity = 67/122 (54.92%), Postives = 93/122 (76.23%), Query Frame = 1
Query:  484 IRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQK-RFGIAKMEGKAY 846
            I  +LPHR+PF LVD+VIE  PG  AVA+KNVTIN+  F GHFPERP+MPGVL+VE+MAQVGG+++ Q +    +  F FAGI+ V+FRKPV+ GD L++   L+ +++ RFG  K++G+A+
Sbjct:   17 ILGLLPHRYPFALVDKVIENIPGERAVAVKNVTINEPQFQGHFPERPLMPGVLIVESMAQVGGIIVTQMQ-NLPKGLFVFAGINNVKFRKPVVPGDQLIISCDLLSIKRQRFG--KVKGEAH 135          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CLOPS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens (strain SM101 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.229e-29
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAK 828
            +M+IN+I++ILPHR+PFLLVD+V E       VA KNVTIN+ FF GHFP+ P+MPGVL+VEA+AQ G + +L  E    +   FFAGIDKVRF+K V+ GDTL + + ++KL+   G  K
Sbjct:    1 MMNINEIKEILPHRYPFLLVDKVEEITES-KVVAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTP-FFAGIDKVRFKKQVLPGDTLRLEVEIIKLRGSIGFGK 119          
BLAST of CK935221 vs. ExPASy Swiss-Prot
Match: FABZ_CLOP1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.229e-29
Identity = 65/121 (53.72%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  466 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGIDKVRFRKPVIAGDTLVMRMTLVKLQKRFGIAK 828
            +M+IN+I++ILPHR+PFLLVD+V E       VA KNVTIN+ FF GHFP+ P+MPGVL+VEA+AQ G + +L  E    +   FFAGIDKVRF+K V+ GDTL + + ++KL+   G  K
Sbjct:    1 MMNINEIKEILPHRYPFLLVDKVEEITES-KVVAYKNVTINEPFFQGHFPDYPVMPGVLIVEALAQAGAIALLNKEEFKGKTP-FFAGIDKVRFKKQVLPGDTLRLEVEIIKLRGSIGFGK 119          
The following BLAST results are available for this feature:
BLAST of CK935221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_PROM91.449e-2954.84(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PELTS1.449e-2951.56(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOUR1.449e-2952.76(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOMG1.449e-2961.32(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOKA1.449e-2951.94(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANATD1.449e-2957.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
LPXZ_BACTN1.893e-2951.97Bifunctional enzyme lpxC/fabZ OS=Bacteroides theta... [more]
FABZ_PROMS1.893e-2954.92(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOPS3.229e-2953.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOP13.229e-2953.72(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935221 ID=CK935221; Name=CK935221; organism=Citrus sinensis; type=EST; length=847bp
GGGGGCTTTACACAGTACAACTTTTGCCAACACCCAATCCCATCATTGGT
CTCTCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTACCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAGACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGATAAAGTAAGATTCAGG
AAACCAGTGATTGCAGGTGACACTTTGGTCATGAGAATGACACTTGTCAA
GCTACAGAAACGCTTCGGAATAGCAAAGATGGAAGGGAAAGCTTATG
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