CK935222

Overview
NameCK935222
Unique NameCK935222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9253 contig Csv1_Contig9253:1..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935222 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 9.246e-75
Identity = 139/199 (69.85%), Postives = 161/199 (80.90%), Query Frame = 3
Query:  285 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSGITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTXHLLKDVPGLI 881
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCS  TAVTFRGP++T +DSLVGQALF            P   VE PL+++VST Q ++P+S GAI G LREVGLT +L K VP +I
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVSTDQKLVPNSHGAIGGLLREVGLTFYLNKSVPDII 199          
BLAST of CK935222 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.060e-74
Identity = 135/171 (78.95%), Postives = 149/171 (87.13%), Query Frame = 3
Query:  369 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSGITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTXHLLKDVPGLI 881
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCS +TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLT HLLKDVPG++
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIV 171          
BLAST of CK935222 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.296e-60
Identity = 115/152 (75.66%), Postives = 129/152 (84.87%), Query Frame = 3
Query:  426 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSGITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTXHLLKDVPGLI 881
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCS +TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLT HLLKDVPG++
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIV 151          
BLAST of CK935222 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.157e-47
Identity = 94/118 (79.66%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  528 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSGITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTXHLLKDVPGLI 881
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCS ITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLT HLLKDVPGLI
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLI 118          
BLAST of CK935222 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 75/292 (25.68%), Postives = 140/292 (47.95%), Query Frame = 3
Query:    6 TLTKHEPQXXSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSGITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTXHLLKDVPGLI 881
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+ + ++ F        D +V  ++F            P    E PLY+++ +     P+++ A+   L + G    L   +P +I
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAAYIIGCNPRIE-ETPLYEVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVI 3038          
The following BLAST results are available for this feature:
BLAST of CK935222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY9.246e-7569.85Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA2.060e-7478.95Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.296e-6075.66Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO8.157e-4779.66Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI5.324e-2225.68Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_E03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935222 ID=CK935222; Name=CK935222; organism=Citrus sinensis; type=EST; length=882bp
GGGGCACACTCACCAAGCACGAGCCACAAANNNATTCATTAAGGGTTCAA
CTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGG
CCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCA
ACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCAT
ATGACGGAGCTTAAGGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGAT
TAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCA
ACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTG
GTGGTCGAAGTGCCGAAGCTCGGGAAGGAAGCTGCTACAAAGGCCATCAA
AGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCA
CCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGATC
GGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTT
CGCCGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAACA
AGGGCGCTCGCGTTCTTGTTGTCTGTTCGGGGATCACGGCAGTCACTTTC
CGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGTT
CGGTGATGGTGCTGCTGCTGTGATCGTGGGTGCCGATCCTGACACGTCGG
TCGAGCGTCCGTTGTATCAGCTCGTGTCGACTTCGCAGACGATCCTCCCT
GACTCTGACGGTGCAATTGACGGACACTTGCGCGAAGTCGGTCTCACNNN
CCATTTGCTTAAAGACGTCCCCGGCTTGATCT
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