CK935224

Overview
NameCK935224
Unique NameCK935224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A + R +I GF  +A PL   LTK G  F+W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + + AI    +      +G+P ++
Sbjct:  914 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 1091          
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A + R +I GF  +A PL   LTK G  F+W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + + AI    +      +G+P ++
Sbjct:  916 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 1093          
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A + R +I GF  +A PL   LTK G  F W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + + AI    +      +G+P ++
Sbjct:  382 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 559          
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 56/182 (30.77%), Postives = 96/182 (52.75%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYL-LGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A + R +I GF  +A PL   LTK G  F+W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + M+A +  +RK    L +G+P ++
Sbjct:  377 KKAQLC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLR-MVAAIAVLRKDAGKLTMGQPLVI 554          
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12
Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A + R +I GF  +A PL   LTK G  F W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + + AI    +      +G+P ++
Sbjct:  382 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYP-LTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 559          
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A   R +I GF  +A PL   LTK G  F W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + + AI    +      +G+P ++
Sbjct:  382 KKAQIC--QKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGLCRLWIPGFAEMAAPLYP-LTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDVGKLTMGQPLVI 559          
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 52/181 (28.73%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG--FHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECD-ACGVGIGAISSQND---KPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIV 662
            KK++ C    QV+YLG+L+      +   + +TV+  P P + +++R FL  A + R +I  F  +A PL  L TK G  F+W  + + A+ ++K AL +   L L D ++PF +  D   G   G ++ +     +PVA+ S+ L       P C + + AI    +      +G+P ++
Sbjct:  377 KKAQIC--QKQVKYLGYLLREGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPRFAEMAAPLYPL-TKTGTLFNWGPDQQKAYHEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVI 554          
The following BLAST results are available for this feature:
BLAST of CK935224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
POL_XMRV33.558e-1229.28Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_MLVMO3.558e-1229.28Gag-Pol polyprotein OS=Moloney murine leukemia vir... [more]
POL_MLVFF4.647e-1229.28Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVAV4.647e-1230.77Pol polyprotein OS=AKV murine leukemia virus GN=po... [more]
POL_MLVFP6.070e-1229.28Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVF51.766e-1129.28Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVRD5.138e-1128.73Pol polyprotein OS=Radiation murine leukemia virus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935224 ID=CK935224; Name=CK935224; organism=Citrus sinensis; type=EST; length=840bp
GGGGATAAATTAAATGATTGATTGTCTCAATTCTTAGTTTTTTTTAATGA
TATTTTGGTGTACAGCAAAACTTGGGCAGATCATATTTTCCATCTTAAAA
CAGTTTTGCAGATTTTATCTGATAACTCTCTGTTTAAAAAAAATCAAAGT
GTTGTTTTGGAGTTTTGCAGGTAGAGTATTTGGGTCATCTTATTTCCCTT
GTAGGAGTGGCTGTTGATCCAAAGAAAATTCAAACCGTACTTGAGTGGCC
AATTCCATCATCGACTAAAGAAGTAAGGGGCTTTCTTAGATTAGCGAGTT
ATTACCGCAAGTTCATTCGAGGCTTTGGGGGAATTGCAACACCTTTAACT
AGGCTATTAACAAAGGAAGGCTTTCATTGGACCTCAGAAGCAGAATCTGC
CTTCACTCAGTTGAAGCACGCATTAACATCTCCTCATGTTCTTCGATTGC
AGGACTTTTCACAGCCATTTGTTGTCGAGTGTGATGCTTGTGGAGTCGGT
ATTGGAGCTATATCATCACAAAATGACAAGCCAGTAGCATTTTTTAGTGA
GGCACTCCAGGGTTCTATGTTGGTCTTGCCCACATGCGAGAAAGAGATGC
TTGCAATCGTCAAGGCAATTCGCAAATGGCGTCCCTATTTGTTGGGTAAG
CCTTTCATTGTTCGTACAGACCAAAAGAGCCTAAAATTTTTAATGGAACA
ACGCATTACAACCATGGCTCAGACATGATGGTTGCCAAAAATTCTTGGCT
ATGATTATACAATTCAATGCAAAAAAAGATCAGAAAATCGAGGTGCCGAC
GCTTTATCACGATTAGTANAGCTTGAATTTTCAGCAATCT
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