CK935407

Overview
NameCK935407
Unique NameCK935407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 189
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   85 EIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 189
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMMT 147          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   74 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTS 137          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK935407 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 ELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 192
            E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
The following BLAST results are available for this feature:
BLAST of CK935407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CALM_PYUSP6.277e-1151.56Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALM_OREMO6.277e-1152.38Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_LOCMI6.277e-1151.56Calmodulin OS=Locusta migratoria PE=1 SV=2[more]
CALM_HALOK6.277e-1151.56Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALM_DROME6.277e-1151.56Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_CIOIN6.277e-1152.38Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM_APLCA6.277e-1151.56Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMB_ARBPU6.277e-1151.56Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CALMA_HALRO6.277e-1151.56Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALM1_BRALA6.277e-1151.56Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_A08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935407 ID=CK935407; Name=CK935407; organism=Citrus sinensis; type=EST; length=474bp
GAGCTCCGCGAGGCGTTTGATCTCTACGATCAGGACAAGAACGGTTTGAT
TTCGGCGGAGGAGTTGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCT
CGGTTGATGGATGTGTGGCGATGATTAAGCCGGTGGATGCCGATGGTGAT
GGCAATGTGAATTTTGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAA
ACCTGGTCCTGCGCCGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGG
CCGTACCGATATCAACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGT
GCCTACTTGTGTCTACTACTTTTAATGTTAATAAACTCTGATGCATTTTC
AATGGTTTAAAAATTGGCTTACGATATTAATTTGACTGTACGGTCTCAAT
GAATCGATGAGTTATGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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