CK935413

Overview
NameCK935413
Unique NameCK935413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3182 contig Csv1_Contig3182:340..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.111e-33
Identity = 80/248 (32.26%), Postives = 135/248 (54.44%), Query Frame = 3
Query:  189 ISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            ++  PV+DM              K++ AC+ WGFF+LVNHG+S+  L+ V+K  K  +  +ME++ K       V   G   V SE   LDW   F +  LP         P L    R T++ +++EL+ LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  +G+W+ + P+ ++ ++N+GD +E++TNG Y+SI HR I  S
Sbjct:    1 MATFPVVDMDLINGEERAATLE-KINDACENWGFFELVNHGISTELLDTVEKMNKDHYKKTMEQRFKEM-----VAAKGLEAVQSEIHYLDWESTFFLRHLPSSNISE--IPDLEEDYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQS 240          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.451e-33
Identity = 78/264 (29.55%), Postives = 139/264 (52.65%), Query Frame = 3
Query:  135 PRYICPDEDSPLNSDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNG--KWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            P ++  +++ P  + D     +P+I +              ++  AC++WG FQ+++HGV +  +  + +  + FF L  E+K +Y    G   GF  +  +  E   DW +I +  + PV  R    +P+ P      +E YS  L  L+ NL+  + + + ++ E L +   +  Q + +N+YP CPQP+  +GL  H+D   +T+LLQ + V GLQ   +G   WI + P+  AF+VN+GD    M+NG +++ +H+A+VN
Sbjct:   22 PSFVRDEDERPKVAHDRFSDAVPLISLHGIDGARRAQIRD-RVAAACEDWGIFQVIDHGVDADLIADMTRLAREFFALPAEDKLRYDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVKARDYGRWPEKPAGWCAVVERYSERLMGLSCNLMGVLSEAMGLETEALAKACVDMDQKVVVNFYPRCPQPDLTLGLKRHTDPGTITLLLQ-DLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAVVN 283          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: FL3H_PETHY (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 81/264 (30.68%), Postives = 143/264 (54.17%), Query Frame = 3
Query:  141 YICPDEDSPLNSDDTLISQIPVIDMQXXXXXXXXXXXXA-KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQ-IKNNGK-WIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            +I  +++ P  + +   ++IP+I ++              K+  AC++WG FQ+V+HGV +  + ++    K FF L  EEK ++    G   GF  +  +  E   DW +I +  + P   R    +P  P       + YS +L  LA  L+  + + + ++ E L +   +  Q + +N+YP CP+P+  +GL  H+D   +T+LLQ ++V GLQ  K+NGK WI + P+  AF+VN+GD    ++NG +++ +H+A+VNS
Sbjct:   22 FIRDEDERPKVAYNQFSNEIPIISLEGIDDETGKRAEICDKIVKACEDWGVFQVVDHGVDAEVISQMTTFAKEFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEVVQDWREIVTYFSYPTRARDYSRWPDKPEGWIAVTQKYSEKLMELACKLLDVLSEAMGLEKEALTKACVDMDQKVVVNFYPKCPEPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATKDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNS 284          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.896e-33
Identity = 81/241 (33.61%), Postives = 130/241 (53.94%), Query Frame = 3
Query:  201 PVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAI 914
            PVIDM+             K+  AC+ WGFF+LVNHG+S   ++ V++  K  +N  ME++ K       V   G   V SE   LDW   F +  LPV        P L    R  ++ ++ +L+ LA  L+  + + + ++   L++ F          +++ YPPCP+PE + GL  H+D   + +L Q N+V GLQ+  +G+WI + P+ ++ ++NIGD LE++TNG Y+S+ HR I
Sbjct:    5 PVIDMEKLNGEERAPTME-KIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEM-----VATKGLEAVQSEINDLDWESTFFLRHLPVSNISE--IPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVI 237          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.233e-33
Identity = 76/227 (33.48%), Postives = 131/227 (57.71%), Query Frame = 3
Query:  258 KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHL--FPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFF--DNGFQ-SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            K+  AC+ WGFF+LV+HG+ + FL+ V++  K  +   +E++ K       V   G   V +E   +DW   F +     HL K ++   P L    R+ ++ ++++L+ LA  L+  + + L ++   L++ F   NG     +++ YPPCP PE + GL  H+D   L +L Q ++V GLQ+  +G+WI + P+ ++ ++N+GD LE++TNG YRS+EHR I  +
Sbjct:   23 KIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKEL-----VASKGLEAVKTEVNDMDWESTFYLR----HLPKSNISEVPDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQT 240          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.223e-33
Identity = 79/265 (29.81%), Postives = 138/265 (52.08%), Query Frame = 3
Query:  138 RYICPDEDSPLNSDDTLISQIPVIDMQXXXXXXXXXXXXAK-LDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQI--KNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            +++  +++ P  + +    +IPVI +              + +  AC+ WG FQ+V+HGV ++ +  + +  + FF L  EEK ++    G   GF  +  +  E   DW +I +  + PV  R    +P  P       E YS +L  LA  L+  + + + ++ E L     +  Q + +NYYP CPQP+  +GL  H+D   +T+LLQ ++V GLQ    +   WI + P+  AF+VN+GD    ++NG +++ +H+A+VNS
Sbjct:   17 KFVRDEDERPKVAYNEFSDEIPVISLAGIDDVDGKRGEICREIVEACENWGIFQVVDHGVDTSLVADMTRLARDFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPQGWAKVTEEYSEKLMGLACKLLEVLSEAMGLEKESLTNACVDMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRDDGNTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNS 280          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.229e-32
Identity = 85/281 (30.25%), Postives = 138/281 (49.11%), Query Frame = 3
Query:   96 VQELVKNPMLVVPPRYICPDEDSPLNSDDTLISQIPVIDMQXXXXXXXXXXXXA-KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGD---VEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNSM 926
            V+ LV + +  VP  ++ P +D     +   +   PVID+Q              K+  A ++WGFFQ+VNHG+ ++ L++  +  + FF    E KK+Y+        V         S      W D       P     P    + P    ++L  +S ++K L   L+  + + L +    L+++ D        NYYPPCPQPE  MG   H+D   +TILLQ +++ GLQ+ +   W+ + P P + +VNIGD L++++N  Y S+EHRAI N++
Sbjct:   26 VKGLVDSGITKVPQIFVLPPKDRAKKCETHFV--FPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAP----NPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQ-DDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNV 299          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.737e-32
Identity = 72/222 (32.43%), Postives = 125/222 (56.31%), Query Frame = 3
Query:  258 KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAI 914
            K+  AC+ WGFF+ VNHG+S   L+KV+K  K  +   MEE+ K       ++  G   + SE   +DW   F +  LPV        P L    R  ++ ++ +++ L+  L+  + + L ++   L++ F    +     +++ YPPCP P+ V GL  H+D   + +L Q ++V GLQ+  +G+W+ + P+ ++ +VN+GD LE++TNG Y+S+EHR +
Sbjct:   23 KIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFKE-----SIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISD--VPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVL 237          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.575e-32
Identity = 74/243 (30.45%), Postives = 134/243 (55.14%), Query Frame = 3
Query:  195 QIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNG-FQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            Q+PV+D+                  A ++WG FQ+VNHG+ +  +++++K  + FF L   EK+   +  G VEG+G+   +  +++    D   + T P        +PK PP  R+  E Y+  +K+L+  ++  + + L +  E ++E   NG +  M +N+YPP P  +   GL PH+D + LT+++  NE+ GLQ+  +  WI +  +P+A IVNIGD + +++NG Y+++ H+  V+
Sbjct:    1 QVPVVDLSCPDEELVARTVVK----ASEDWGVFQVVNHGIPTELIQRLQKVGREFFELPEAEKRSCAREAGSVEGYGRRIELDIKKRKGIVDQIYLSTWPPSSVNYRYWPKSPPDYREVNEEYARHVKTLSEKIMEWLSEGLGLGREAIKEV--NGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLII-TNEIPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVD 236          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.669e-32
Identity = 73/222 (32.88%), Postives = 116/222 (52.25%), Query Frame = 3
Query:  258 KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQH-PGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            K+  A ++WGFFQ++NHG+    LEK+   ++ F     E KK ++   P     +   F +      +W D     T P     P     LP +  + +  YS E+  L   L   + + L +    L++        +  +YYPPCPQP+  +GLT HSD S LTILLQ + + GLQ+ ++  W+ + P+P A +VN+GD L+++TN  + S+EHR + N
Sbjct:   83 KIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAP----DPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQ-DHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLAN 299          
The following BLAST results are available for this feature:
BLAST of CK935413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ACCO2_MALDO1.111e-3332.261-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
FL3H_HORVU1.451e-3329.55Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
FL3H_PETHY1.896e-3330.68Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
ACCO_ACTDE1.896e-3333.611-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO_PRUMU3.233e-3333.481-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
FL3H_MATIN4.223e-3329.81Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
ACCH3_SOLLC1.229e-3230.251-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO1_ARATH2.737e-3232.431-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
FLS_MATIN3.575e-3230.45Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
ACCH1_ARATH4.669e-3232.881-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004555_H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935413 ID=CK935413; Name=CK935413; organism=Citrus sinensis; type=EST; length=926bp
GGGGGTTCCAAAACCAATACAAAACTGTAGCAATCTTAAGAGGATTTGTG
GAACAAAAGATGGCCAAGATTGGAGGTTCTCTGCTTGTTCCTTGTGTTCA
AGAGTTGGTCAAGAATCCTATGTTAGTTGTCCCTCCTAGATACATTTGTC
CGGACGAAGATTCACCACTCAATTCTGATGATACTTTGATTTCACAGATA
CCAGTTATTGACATGCAGAGCTTGCTTTCTGAAGAATCAATGGATTCTGA
GTTAGCCAAGCTCGACTTCGCTTGCAAAGAATGGGGTTTTTTCCAGCTGG
TAAACCATGGAGTAAGCTCAGCATTTCTAGAGAAAGTGAAGAAAGAGGTT
AAGGGCTTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCA
TCCAGGAGATGTAGAAGGATTTGGACAAGCCTTTGTTGTATCTGAGGAAC
AAAAGCTTGATTGGGCTGACATTTTCTCCATGATCACTCTTCCAGTTCAT
CTGAGGAAGCCACACTTATTTCCTAAGCTCCCTCCTTCCCTCAGAGACAC
CTTGGAAGTTTACTCGATGGAGTTAAAATCTCTGGCCATGAACCTGATAT
CGAAAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTC
TTTGACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCC
TCAGCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTC
TTACCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAAC
AATGGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAA
CATCGGAGACACATTGGAGATTATGACCAATGGGACATACCGTAGCATTG
AACATCGTGCAATTGTGAACTCTATG
back to top