CK935413

Overview
NameCK935413
Unique NameCK935413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3182 contig Csv1_Contig3182:340..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.398e-28
Identity = 80/254 (31.50%), Postives = 128/254 (50.39%), Query Frame = 3
Query:  198 IPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWAD--IFSMITLPVHLRKPHLFPKLPPSLRD---TLEVYSMELKSLAMNLISKMGKVLNIKDEEL------REFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNG--KWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            +PV+DM+              +  A ++WG F L  HGV    L  V+  + G F L   EK +  + PGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E+++LA  L+      L +  E++       +  +    +M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+  +G  +W+ +  +P A +VN+GD  +I+TNG + S+ HRA+VN
Sbjct:   49 VPVVDMRDPCAAEA-------VALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVN 292          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.090e-28
Identity = 66/223 (29.60%), Postives = 119/223 (53.36%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSM-----RMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+ WGFF+LVNH +    +++V++  K  +   ME++ K       VEG      V +   +DW   F +  LPV        P L    R  ++ ++ +L+ LA  ++  + + L ++   L+  F      +     +++ YPPCP+PE   GL  H+D   L +L Q + V GLQ+  +G+W+ + P+ ++ ++N+GD +E++TNG Y+S+ HR +  +
Sbjct:   27 ACENWGFFELVNHSIPVELMDEVERLTKEHYKKCMEQRFKELM-ASKVEG-----AVVDANDMDWESTFFIRHLPVSNLSE--IPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQT 241          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.463e-27
Identity = 84/290 (28.97%), Postives = 141/290 (48.62%), Query Frame = 3
Query:   96 VQELVKNPMLVVPPRYICPDEDSPLNSDDTLISQ------IPVIDMQXXXXXXXXXXXXA-KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKL------DWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNSM 926
            V+ +V   +  +P  +I    D P N D   + +      IPVI++               K+  A +++GFFQ+VNHG+    ++K+   V+ F     + K++Y+      + F + F+ S    L      +W D    I +  +   P  FP +    RD L  YS  +++L + L   + + L +K   L E        +  +YYP CPQPE   G + HSD   LTIL+Q +++ GLQI    +WI +  +P A ++NI D L+++TN  ++S+EHR + N +
Sbjct:   55 VKGIVDTGITKIPRIFI----DQPKNLDRISVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSR----DRFNKNFLYSSNYVLIPGIACNWRDTMECI-MNSNQPDPQEFPDV---CRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKV 331          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.714e-27
Identity = 65/222 (29.28%), Postives = 118/222 (53.15%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDN----GFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+ WGFF+LVNHG+    ++ V++  K  +   ME++ K       +EG     + +E   +DW   + +  LP         P L    R  ++ ++  L+ LA  L+  + + L ++   L++ F       F +   NY PPCP+ + + GL  H+D   + +L Q ++V GLQ+  + +WI + P+ ++ ++N+GD LE++TNG Y+S+ HR +  +
Sbjct:   27 ACENWGFFELVNHGIPPELMDTVERVTKAHYKKCMEQRFKELVASKALEG-----IQAEVTDMDWESTYFLRHLPQSNISE--VPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANY-PPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVAQT 240          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.316e-26
Identity = 80/257 (31.13%), Postives = 128/257 (49.81%), Query Frame = 3
Query:  192 SQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKL---PPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFF---DNGFQSMRMNYYPPCPQPEK-------VMGLTPHSDGSALTILLQINEVEGLQIK-NNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            S IPVIDM               L  AC+++GFF+++NHGVS+  +  ++ E   FF+L   EK +   +P    G+G +  +     + W +   M         P LFP L   P + R+ LE Y+  ++ +  +++ K+   L IK            N    +R+N+YPPCP   K       V+G   H+D   +++L + N   GLQI  N+G WI + P   +F  N+GD+L++MTNG ++S+ HR + N
Sbjct:   16 SLIPVIDMSDPESKHA-------LVKACEDFGFFKVINHGVSAELVSVLEHETVDFFSLPKSEKTQVAGYPF---GYGNS-KIGRNGDVGWVEYLLMNANHDSGSGP-LFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVL-RSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLAN 259          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.828e-26
Identity = 79/263 (30.04%), Postives = 130/263 (49.43%), Query Frame = 3
Query:  150 PDEDSPLNSDDTLIS----QIPVIDMQXXXXXXXXXXXXA--KLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFN--LSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAI 914
            P+  S  N++ + I     ++PVID+                ++  A KEWGFFQ+VNHG+     E +  E K  F+   S++ ++++     +   +G     S  Q    ++ F +I     L +         +LR  +E Y  E+  +A  +   +GK +N+  E     F+     +R+N Y P     +V GL PH+D S LTIL Q +++ GL+++NNG+WI + P   A  VNIGD  + ++NG Y+S+ HR I
Sbjct:   20 PNSTSESNTNTSTIQTSGIKLPVIDLSHLTSGEEVKRKRCVKQMVAAAKEWGFFQIVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQ-YSVSEAFHII-----LSEVSRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENSFLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQ-DQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVI 275          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 77/257 (29.96%), Postives = 123/257 (47.86%), Query Frame = 3
Query:  174 SDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEEL-------REFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQI-KNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            S D +   IPVID+               +  A K WG FQ+ NHG+S   L+ ++   K  F++  E K +       V G+G+  +    +K  W++ F++           L+P         ++ Y  E++ LA  L+  +   L +  E++       +     G  ++R+N+YP CP+PE+ MGL  H+D + LTIL Q N   GLQ+ +    W+ + P P   +VNIGD   I++NG   S+ HRA VN
Sbjct:   41 SFDAVEESIPVIDLSNPDVTTL-------IGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKGVSGYGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLYCILGSLGVTVEDIEWAHKLEKSGSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVN 289          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.000e-26
Identity = 67/230 (29.13%), Postives = 118/230 (51.30%), Query Frame = 3
Query:  255 AKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEE--KKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSM-----RMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            A L  AC+ WGFF+L+NHG+S    E+ +   K  +        ++++ +        G+     +   LDW   F +  LP         P L      T++ +++ L+ LA  L+  + + L ++   L+  F  G   +     +++ YPPCP+PE + GL  H+D   + +L Q + V GLQ+  + +WI + P+ ++ +VNIGD LE++TNG Y+S+ HR +  +
Sbjct:   14 AVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENV---DGDNLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQT 238          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.043e-23
Identity = 67/228 (29.39%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLP--VHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEEL--REFFDNGFQS-MRMNYYPPCPQPE----KVMGLTPHSDGSALTILLQINEVEGLQI-KNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+++GFF+LVNHGV    +  ++ E   FF  S  EK +    P D  G+G   +      + W +   + T P  +  +   +F + P   R  +E Y   +K++   ++  M + L I+      R   D    S  R+N+YPPCP+ +     ++G   H+D   +++L + N   GLQI   +G W+ + P   +F +N+GD L++MTNG ++S++HR + ++
Sbjct:   44 ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDR--AGPPDPFGYGSKRI-GPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVL-RSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADT 267          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 72/228 (31.58%), Postives = 122/228 (53.51%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSM---ITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS---MRMNYYPP---CPQPEKVMGLTPHSDGSALTILLQINEVEGLQI-KNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+E+GFF+++NHGV    L ++++E   FF L    K K    P D  G+G   +      L W +   +   + L  H +   +F   P   R+ +E Y  E+K ++   +  + + L I+ +E         +S   +RMN+YP     P  E++ G   H+D   ++ LL+ N+ EGLQI   +G W+ +TP  ++F V +GDTL++MTNG ++S++HR + N+
Sbjct:   44 ACEEFGFFKVINHGVRPDLLTQLEQEAINFFALHHSLKDK--AGPPDPFGYGTKRI-GPNGDLGWLEYILLNANLCLESH-KTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEI-GFGEHTDPQLIS-LLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNT 265          
The following BLAST results are available for this feature:
BLAST of CK935413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
G3O21_WHEAT2.398e-2831.50Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO_PERAE4.090e-2829.601-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
DV4H_CATRO3.463e-2728.97Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO_DIOKA7.714e-2729.281-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
G2OX1_ARATH1.316e-2631.13Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX7_ARATH3.828e-2630.04Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G3OX4_ARATH5.000e-2629.96Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
ACCO_DENCR5.000e-2629.131-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
G2OX_PHACN1.043e-2329.39Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX3_ARATH5.174e-2331.58Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935413 ID=CK935413; Name=CK935413; organism=Citrus sinensis; type=EST; length=926bp
GGGGGTTCCAAAACCAATACAAAACTGTAGCAATCTTAAGAGGATTTGTG
GAACAAAAGATGGCCAAGATTGGAGGTTCTCTGCTTGTTCCTTGTGTTCA
AGAGTTGGTCAAGAATCCTATGTTAGTTGTCCCTCCTAGATACATTTGTC
CGGACGAAGATTCACCACTCAATTCTGATGATACTTTGATTTCACAGATA
CCAGTTATTGACATGCAGAGCTTGCTTTCTGAAGAATCAATGGATTCTGA
GTTAGCCAAGCTCGACTTCGCTTGCAAAGAATGGGGTTTTTTCCAGCTGG
TAAACCATGGAGTAAGCTCAGCATTTCTAGAGAAAGTGAAGAAAGAGGTT
AAGGGCTTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCA
TCCAGGAGATGTAGAAGGATTTGGACAAGCCTTTGTTGTATCTGAGGAAC
AAAAGCTTGATTGGGCTGACATTTTCTCCATGATCACTCTTCCAGTTCAT
CTGAGGAAGCCACACTTATTTCCTAAGCTCCCTCCTTCCCTCAGAGACAC
CTTGGAAGTTTACTCGATGGAGTTAAAATCTCTGGCCATGAACCTGATAT
CGAAAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTC
TTTGACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCC
TCAGCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTC
TTACCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAAC
AATGGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAA
CATCGGAGACACATTGGAGATTATGACCAATGGGACATACCGTAGCATTG
AACATCGTGCAATTGTGAACTCTATG
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