CK935413

Overview
NameCK935413
Unique NameCK935413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3182 contig Csv1_Contig3182:340..1265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.758e-23
Identity = 84/306 (27.45%), Postives = 135/306 (44.12%), Query Frame = 3
Query:   18 YKTVAILRGFVEQKMAKIGGSLLVPCVQELVKNPMLVVPPRYICPDEDSPLNSDDTLISQIPVIDMQXXXXXXXXXXXX-AKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVE-GFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPK---LPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            Y   + L+ F E K+           V+ LV   +  VP  +  P  +       + +  IP ID+              AK+  A +++GFFQ +NHGV    +EK+   ++ F +   E +K ++      +  +     + E     W D  S +  P         PK   LP    + +  YS E+  LA  +   + + L +    L+E        M  + +PPCP+P +  G   H+D S LTILL  N   GLQ+  +G WI + P P A I N+GD L++++N  + S+EHR + N
Sbjct:    5 YDRASELKAFDEMKIG----------VKGLVDAGVTKVPRIFHNPHVNVANPKPTSTVVMIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAPD-------VPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILAN 292          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.826e-23
Identity = 70/260 (26.92%), Postives = 128/260 (49.23%), Query Frame = 3
Query:  171 NSDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS---MRMNYYPPCPQ----PEKVMGLTPHSDGSALTILLQINEVEGLQIK-NNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNSM 926
            N   T  S IP++D+                  AC+++GFF+++NHG+    + +++ E   FF+L   EK+K    P +  G+G   +      + W +   + T   H     L+ +     R  L+ Y   ++++A  ++  M + L I+ + +        QS    R+N+YP CP+     E ++G   H+D   ++IL + N   G QI   +G WI + P  ++F +N+GD+L++MTNG ++S+ HR + N +
Sbjct:   18 NMPITFSSSIPLVDLSKPDAKTLIVK-------ACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEK--AGPANPFGYGNKRI-GLNGDIGWIEYLLLTTNQDH--NFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISIL-RSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGI 264          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.966e-22
Identity = 64/230 (27.83%), Postives = 122/230 (53.04%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPH---LFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEE-----LREFFDNGFQSMRMNYYPPCPQPEKVM---GLTPHSDGSALTILLQINEVEGLQI-KNNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            AC+E+GFF++VNHGV    + ++++E  GFF L    K +    P +  G+G   +      + W +   +   P  L  P    +F + P   R+++E Y  E+K ++  ++  + + L I+  +     LR+  +     +R+N+YP   +  + M   G   H+D   +++L + N   GLQI   +G W+ + P  ++F +N+GD L++MTNG ++S++HR + ++
Sbjct:   48 ACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNR--AGPPEPYGYGNKRI-GPNGDVGWIEYLLLNANP-QLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRD--EKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVL-RSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADT 270          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.904e-17
Identity = 71/278 (25.54%), Postives = 124/278 (44.60%), Query Frame = 3
Query:  144 ICPDEDSPLNSDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYWQHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFF---DNGFQSMRMNYYPPCPQ-------PEKV-------MGLTPHSDGSALTILLQINEVEGLQIK-NNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            + P   S + +  T    IP ID+             A     C+E+GFF++VNH V    + ++ +E   FF+ +  EK++         G        ++ +L++  + S   + +  R   +    P      +  Y   +K L   ++    + L + D+         ++    +R+N+YPP  +       P K+       +G   HSD   LTI L+ N V GLQI  ++G WIP+ P P+ F V +GD L+++TNG + S+ HR + N+
Sbjct:    2 VVPSPTSMIRTKKTKAVGIPTIDLSLERSQLSELVVKA-----CEEYGFFKVVNHSVPKEVISRLDEEGIEFFSKNSSEKRQAGTSTPFGYGCKNIGPNGDKGELEYLLLHSN-PISISERSKTIAKDHPIKFSCIVNDYIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTI-LRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNT 272          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: YQK1_SCHPO (UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe GN=SPCC1494.01 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.561e-11
Identity = 56/230 (24.35%), Postives = 100/230 (43.48%), Query Frame = 3
Query:  270 ACKEWGFFQLVNHGVSSAFLEKVKKEVKGFFNLSMEEKKKYW-----QHPGDVEGFGQAFVVSEEQKLDWADIFSMITLPVHLRKPHLFPKLPPSLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYY---PPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIK-----NNGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVN 920
            ACK WGF  L NHG+    +++  K    FF++ +EEK+KY       H G    FG+   +  + + D  + + +   P   +  +L P +   + + L+ +      L + L+        I  +   +   +    +R+  Y       + E       HSD  ++T+L Q  +  GL+I+      +  WI +   P+  +VNI D L+  T+G  RS  HR  ++
Sbjct:   26 ACKNWGFVSLKNHGIPLDEIDRTFKLADKFFDIPVEEKQKYLFKGGRLHSGYTGHFGEKLDMEHQSRGDLKESYDLAGFP-DPKLENLCPFIAEHMDEFLQ-FQRHCYKLTLRLLDFFAIGFGIPPDFFSKSHSSEEDVLRLLKYSIPEGVERREDDEDAGAHSDYGSITLLFQ-RDAAGLEIRPPNFVKDMDWIKVNVQPDVVLVNIADMLQFWTSGKLRSTVHRVRID 252          
BLAST of CK935413 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 42/131 (32.06%), Postives = 72/131 (54.96%), Query Frame = 3
Query:  537 SLRDTLEVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKN--NGKWIPITPLPNAFIVNIGDTLEIMTNGTYRSIEHRAIVNS 923
            S R  L  Y  ++ + A +++S + + L +  +   EF  +   S+R+  YP  P     +G+  H+D  ALT++ Q N V+GL+I +  +  ++ ++P P A I N+GD + I+TN  Y+S  HR   NS
Sbjct:  214 SFRKALVKYHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLLRYPSSPNR---LGVQEHTDADALTLMSQDN-VKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNS 340          
The following BLAST results are available for this feature:
BLAST of CK935413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GSL_ARATH6.758e-2327.45Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G2OX1_PEA8.826e-2326.92Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_ARATH1.966e-2227.83Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX2_PEA1.904e-1725.54Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
YQK1_SCHPO1.561e-1124.35UPF0676 protein C1494.01 OS=Schizosaccharomyces po... [more]
ISP7_SCHPO2.039e-1132.06Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935413 ID=CK935413; Name=CK935413; organism=Citrus sinensis; type=EST; length=926bp
GGGGGTTCCAAAACCAATACAAAACTGTAGCAATCTTAAGAGGATTTGTG
GAACAAAAGATGGCCAAGATTGGAGGTTCTCTGCTTGTTCCTTGTGTTCA
AGAGTTGGTCAAGAATCCTATGTTAGTTGTCCCTCCTAGATACATTTGTC
CGGACGAAGATTCACCACTCAATTCTGATGATACTTTGATTTCACAGATA
CCAGTTATTGACATGCAGAGCTTGCTTTCTGAAGAATCAATGGATTCTGA
GTTAGCCAAGCTCGACTTCGCTTGCAAAGAATGGGGTTTTTTCCAGCTGG
TAAACCATGGAGTAAGCTCAGCATTTCTAGAGAAAGTGAAGAAAGAGGTT
AAGGGCTTCTTCAATCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCA
TCCAGGAGATGTAGAAGGATTTGGACAAGCCTTTGTTGTATCTGAGGAAC
AAAAGCTTGATTGGGCTGACATTTTCTCCATGATCACTCTTCCAGTTCAT
CTGAGGAAGCCACACTTATTTCCTAAGCTCCCTCCTTCCCTCAGAGACAC
CTTGGAAGTTTACTCGATGGAGTTAAAATCTCTGGCCATGAACCTGATAT
CGAAAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTC
TTTGACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCC
TCAGCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTC
TTACCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAAC
AATGGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAA
CATCGGAGACACATTGGAGATTATGACCAATGGGACATACCGTAGCATTG
AACATCGTGCAATTGTGAACTCTATG
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