CK935508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34 Identity = 76/138 (55.07%), Postives = 93/138 (67.39%), Query Frame = 2 Query: 113 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 G A RKLK RW D Y + LG + K P G+ +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF DG +N+I+E+DEV I G GR G + GDIPGVRF V KV+ VSL + +KEKPR Sbjct: 4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGDIPGVRFVVTKVNNVSLREMVTGRKEKPR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.532e-34 Identity = 73/138 (52.90%), Postives = 103/138 (74.64%), Query Frame = 2 Query: 113 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 G+ A RKL+ R + RW+ + ++ L + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQL+KN K + AFVP DG + Y++E+DEV+I G G +G ++GDIPGVR++VV V+GVSL AL++ KK+KPR Sbjct: 9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGDIPGVRYRVVMVNGVSLKALWEGKKQKPR 146
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34 Identity = 73/141 (51.77%), Postives = 104/141 (73.76%), Query Frame = 2 Query: 101 RKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 517 + +G+ A RKL+ R + R + + YK L + K P G+ A+GIVLEK+GIE++QPNSA+RKC RVQL++NG+ + AFVP DG +N+I+E+DEV+I G G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 5 KSPKGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34 Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = 2 Query: 113 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 G A +L+ R+ RW D Y + LG + K P +G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL + +KEKPR Sbjct: 4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34 Identity = 74/137 (54.01%), Postives = 94/137 (68.61%), Query Frame = 2 Query: 113 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 517 G A RKLK R+ RW+D Y + G E G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNG+++ AF P DG +++I+E+DEV IAG G KG A+GD+ V +KV KV+GVSL+ L + EKP Sbjct: 4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33 Identity = 76/139 (54.68%), Postives = 97/139 (69.78%), Query Frame = 2 Query: 110 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 +G A RKLK R RW+D + ++ G + K P G+ +GIVLEKIG+EAKQPNSAIRKC RVQLIKNG++++AF DG +N+I+E+DEV I G GR G ++GDIPGVRF V KV+ V L L +KEKPR Sbjct: 3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRFVVTKVNNVCLHELVIGRKEKPR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33 Identity = 73/139 (52.52%), Postives = 97/139 (69.78%), Query Frame = 2 Query: 110 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 +G A RKL ++ RW+DK+Y + L + K P G+ A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVR+ V V+ V L + +KEKPR Sbjct: 3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33 Identity = 75/139 (53.96%), Postives = 94/139 (67.63%), Query Frame = 2 Query: 110 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33 Identity = 74/139 (53.24%), Postives = 94/139 (67.63%), Query Frame = 2 Query: 110 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 +G A LK R+ RW D Y + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141
BLAST of CK935508 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33 Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 2 Query: 110 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 520 +G A LK R+ RW D SY + LG N P G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRF+V V+ VSL + + EKPR Sbjct: 3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141 The following BLAST results are available for this feature:
BLAST of CK935508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935508 ID=CK935508; Name=CK935508; organism=Citrus sinensis; type=EST; length=718bpback to top |