CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 4.319e-49
Identity = 85/143 (59.44%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWLA+ LK  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 83/143 (58.04%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 83/143 (58.04%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 83/143 (58.04%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 83/143 (58.04%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 83/143 (58.04%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.641e-48
Identity = 83/143 (58.04%), Postives = 114/143 (79.72%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL++ L+  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.656e-48
Identity = 83/141 (58.87%), Postives = 115/141 (81.56%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT G+I+VVDS DR+R+ +A++E Q ++ +  + ++++LVFANKQD+  AM+P E+ + LGL  L  R W+IQ TCA  GDGLYEGL+WLA+ LK+
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQRMLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLANALKK 179
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF2_RAT (ADP-ribosylation factor 2 OS=Rattus norvegicus GN=Arf2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.656e-48
Identity = 83/143 (58.04%), Postives = 112/143 (78.32%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181
[Close]
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF2_MOUSE (ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.656e-48
Identity = 83/143 (58.04%), Postives = 112/143 (78.32%), Query Frame = 3 
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVF NKQD+  AM   E+ + LGL  L+ R W+IQ TCA  GDGLYEGLDWL++ LK  +
Sbjct:   39 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQK 181
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARF3_BOVIN4.319e-4959.44ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_XENLA1.641e-4858.04ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.641e-4858.04ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.641e-4858.04ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.641e-4858.04ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.641e-4858.04ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.641e-4858.04ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF_AJECA3.656e-4858.87ADP-ribosylation factor OS=Ajellomyces capsulata G... [more]
ARF2_RAT3.656e-4858.04ADP-ribosylation factor 2 OS=Rattus norvegicus GN=... [more]
ARF2_MOUSE3.656e-4858.04ADP-ribosylation factor 2 OS=Mus musculus GN=Arf2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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