CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 162.925 bits (411), Expect = 1.819e-39
Identity = 75/145 (51.72%), Postives = 107/145 (73.79%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            + +GEV++T+PTIGFNVE+V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+RIG +K E   ++++  +  ++++V ANKQDM G MT  EV   LGL +LKNR + I  T A KG+GL + +DWL++TL+  +
Sbjct:   36 LQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSRK 180          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.851e-38
Identity = 70/140 (50.00%), Postives = 102/140 (72.86%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKG-DGLYEGLDWLASTL 425
            +G+++STVPTIGFNVE ++YKN+  TVWDVGGQ K+R LW+HY++ T+ +I+VVDS DRER+ + K+E   ++    +    IL+FANKQDM  AM   E+ + L L  +K+RKW++Q   A+K   G+YEG DW+A++L
Sbjct:   47 LGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSL 186          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.641e-38
Identity = 69/139 (49.64%), Postives = 99/139 (71.22%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            +G+V+ T+PTIGFNVE + YKN+  TVWDVGGQ K+R LW+HY++ T+ +I+VVDS DRER+ + K+E   ++    +    ILV ANKQDM  AM   E+   L L  +K+RKW++Q   A++ DG+YEG DW+A++L
Sbjct:   47 LGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSL 185          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.223e-37
Identity = 72/145 (49.66%), Postives = 105/145 (72.41%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            + +GEV++T+PTIGFNVE+V+YKN+ F VWD+GGQ  +RP WR Y+ NTD +IYVVDS DR+R+G ++QE   ++++  +  +V+ V ANKQD+ G +T  EV + LGL  L+NR   I  T A KG+GL   +DWLA+ L++ +
Sbjct:   36 LQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQKK 180          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 6.469e-37
Identity = 73/140 (52.14%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + E ++T+PTIGFNVE V ++ +  TVWDVGGQ+K+R LW++YF NT  L++VVDS D ERI +AK+E  +++ +P + +S +LVFANKQDM  A +P E+ + L L  LKNR+W I GT A  G GLYEGL W+   +K
Sbjct:   39 LNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQMK 178          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.882e-36
Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = 3
Query:   12 GEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 419
            G+V+ T+PTIGFNVE ++YKN+   VWD+GGQ  +R LWR Y   TD  I+VVDS DRER  + KQE + II+       N+ +L+FANKQDM   +TP E+   L L  L N+KWH+Q   A++GDG+YEG DW+ S
Sbjct:   48 GDVIRTIPTIGFNVEIIEYKNLSMNVWDIGGQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGIYEGFDWIVS 185          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 150.984 bits (380), Expect = 7.152e-36
Identity = 68/143 (47.55%), Postives = 101/143 (70.63%), Query Frame = 3
Query:    3 VHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            + IGEV++T PTIGFNVE + YKN+   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E   ++++  + ++ +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ EGLDWL   +KE
Sbjct:   38 LQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.220e-35
Identity = 73/149 (48.99%), Postives = 104/149 (69.80%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSV 458
            E +  +PTIGFNVE V+YKN+ FT+WDVGG+ KLRPLW+HY+ NT  +++VVDS  R+RI +A  E   ++ +  + ++++L+FANKQD+ GA++  E+ E L L  L   R W+IQG  A  G GLYEGLDWL+   +++ AAG   V
Sbjct:  428 EFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS---RQLVAAGVLDV 573          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.220e-35
Identity = 73/149 (48.99%), Postives = 104/149 (69.80%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSV 458
            E +  +PTIGFNVE V+YKN+ FT+WDVGG+ KLRPLW+HY+ NT  +++VVDS  R+RI +A  E   ++ +  + ++++L+FANKQD+ GA++  E+ E L L  L   R W+IQG  A  G GLYEGLDWL+   +++ AAG   V
Sbjct:  428 EFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS---RQLVAAGVLDV 573          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.081e-35
Identity = 73/138 (52.90%), Postives = 100/138 (72.46%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-FDLKNRKWHIQGTCALKGDGLYEGLDWLAS 419
            + ++ ++ PT+GFNVE V YKNV F +WDVGGQ++LRPLWRHYF  T  LI+V+DS  R R+ +AK+E  +II +  M N V+LV+ANKQD+K AM P EV + L L  +LKN+ W + G+ AL G GL EGL W+++
Sbjct:   39 LNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISN 176          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARL1_DROME1.819e-3951.72ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARFH_DICDI5.851e-3850.00ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARFK_DICDI7.641e-3849.64ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARL1_CAEEL2.223e-3749.66ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF11_CAEEL6.469e-3752.14ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARFF_DICDI1.882e-3651.45ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARL1_YEAST7.152e-3647.55ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARD1_MOUSE1.220e-3548.99GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN1.220e-3548.99GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARF3_YEAST2.081e-3552.90ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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