CK935520

Overview
NameCK935520
Unique NameCK935520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.033e-34
Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = 3
Query:   15 EVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSV 458
            E +  +PTIGFNVE V+YKN+ FT+WDVG + KLRPLW+HY+ NT  +++VVDS  R+RI +A  E   ++ +  + ++++L+FANKQD+ GA++  E+ E L L  L   R W+IQG  A  G GLYEGLDWL+   +++ AAG   V
Sbjct:  408 EFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS---RQLVAAGVLDV 553          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.301e-34
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            + EV+ T PTIG NVE++  KN  F +WD+GGQE LR  W  Y++NT+ +I VVDS+DRER+   K+E   ++    +  + +L+FANKQDMKG MT  E+ + L L  +K+  WHIQ  CAL G+GL +GL+W+ S +
Sbjct:   38 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.301e-34
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 425
            + EV+ T PTIG NVE++  KN  F +WD+GGQE LR  W  Y++NT+ +I VVDS+DRER+   K+E   ++    +  + +L+FANKQDMKG MT  E+ + L L  +K+  WHIQ  CAL G+GL +GL+W+ S +
Sbjct:   38 MNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.322e-33
Identity = 66/140 (47.14%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + EV+ T PTIG NVE++   N  F +WD+GGQE LRP W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct:   38 MNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.322e-33
Identity = 66/140 (47.14%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + EV+ T PTIG NVE++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +L+FANKQD+KG MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct:   38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.813e-32
Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + EV+ T PTIG NVE++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct:   38 MNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.813e-32
Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 428
            + EV+ T PTIG NVE++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++    +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+ S LK
Sbjct:   38 MNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.396e-31
Identity = 61/143 (42.66%), Postives = 99/143 (69.23%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 437
            + EV+ST+ T+G+NVE +Q+K++  T+WD+ G+E++R LW+ ++N    +I+VVDS DR RI +A  E   ++K+  +    +L+FA KQD    M   E+ + LGL D+K+R+W++Q T  L+G G+YEGLDWL++ + E R
Sbjct:   39 LNEVVSTISTLGYNVETIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGIYEGLDWLSTKIIEDR 181          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.823e-31
Identity = 62/141 (43.97%), Postives = 91/141 (64.54%), Query Frame = 3
Query:    9 IGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 431
            + EV+ST PT+G N+E+  Y+N+   +WD+GGQ+ LR  W  Y+ NT  +I V+DS DR R+   K+E   ++    +  S+IL++ANKQD+K AM+P E+   L L  +K+  +HIQ  CAL G GL  GLDWL S + +
Sbjct:   42 LDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHINK 182          
BLAST of CK935520 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.543e-30
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 3
Query:   21 LSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGLDWLASTL 425
            + T PTIG NVE+V Y+N+ F +WD+GGQE LR  W  Y+  TD +I V+DS D  RI   K++   +++   +  + ILV ANKQD+ GAM P EV   LGL  L+  RKW I G CA+KG+GL E L+W+A+ L
Sbjct:   43 VETKPTIGSNVEEVSYRNLDFVIWDIGGQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAVKGEGLPEALEWIANNL 178          
The following BLAST results are available for this feature:
BLAST of CK935520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
ARD1_RAT1.033e-3448.32GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL5B_MOUSE2.301e-3447.48ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN2.301e-3447.48ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARL5A_MOUSE3.322e-3347.14ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_BOVIN3.322e-3347.14ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL5A_RAT2.813e-3246.43ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN2.813e-3246.43ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARFD_DICDI1.396e-3142.66ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARL5_DICDI1.823e-3143.97ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL5_CAEEL1.543e-3048.53ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935520 ID=CK935520; Name=CK935520; organism=Citrus sinensis; type=EST; length=795bp
GGGTGCACATTGGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAAT
GTCGAGAAAGTTCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGG
CGGACAAGAGAAATTGAGGCCACTATGGAGGCATTATTTTAATAACACTG
ATGGACTGATCTATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAA
GCAAAGCAAGAATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAG
TGTCATTTTGGTGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCC
CAATGGAAGTATGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAA
TGGCATATTCAAGGGACTTGTGCACTTAAAGGAGATGGACTTTACGAAGG
CTTGGATTGGTTGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACT
CTTCAGTGGGCACCTCATCATTCTAGGGATCCAGGTTTACACGAGAGGAT
TTGAGGTAGATTGAATGATGAAACTCCTGAGTCATGCGTTTACTGGAGGG
AAGTCCCGTCTGTAATCAAATTCTTTTGGGTTGTATGTATCTAAGGCCAA
TGAAGCTTTTGATAGGGTGCTTACATTTGACCGTACTTGTTTGTGTGACT
TCCTGTAATGTATATTGAAGTGAACTGGACTCGGGGTTCAATACATGTCC
TTTATCCTCCTAAGATTCAAAATATGAGTTAAATCGCACACGCACGGGCA
CAGACACGTGTGCTTACCAGTGTGGTGGTGTAGGATAATTGAATC
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