CK935524

Overview
NameCK935524
Unique NameCK935524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935524_ssr65 microsatellite CK935524_ssr65:65..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2619 contig Csv1_Contig2619:1..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_SYNS9 (Acetylglutamate kinase OS=Synechococcus sp. (strain CC9902) GN=argB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.386e-47
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA-DEFGQSYNINADTV 838
            RV +LSE+LP+IQ+F G+ IV+KYGGAAM   +                    +PV+VHGGGPEIN WLKR  I   FRDGLRVTDA+TM++V MVLVGRVNK +V+ +N+ GA AVGLSG DG L  ARP  +    G VG+VAR++P V+EPL+N G++PVI+SVAA    G+++NINADTV
Sbjct:   13 RVSVLSEALPYIQRFAGRRIVIKYGGAAMAHAE---LRAAVFRDIALLACVGVQPVVVHGGGPEINQWLKRLQIPAEFRDGLRVTDADTMDVVEMVLVGRVNKQIVNGLNQLGARAVGLSGSDGGLVEARPWGDGSH-GLVGDVARINPDVLEPLLNKGYVPVISSVAATPSDGRAHNINADTV 192          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_SYNJA (Acetylglutamate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=argB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.341e-47
Identity = 100/183 (54.64%), Postives = 127/183 (69.40%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            R  IL E+LP+IQ+++G+ IV+KYGGAAM   ++                   RPVLVHGGGPEIN WL++  I   F DGLRVTDA TME+V MVLVG+VNK +V LI+ AG +AVGL G DG L  AR S    ++GFVGEV+ ++P +++ L+  G IPVI+SVAADE GQ+YNINADTV
Sbjct:    8 RAQILIEALPYIQQYQGRVIVIKYGGAAMVHQER---RAEVLRDIVFLACVGIRPVLVHGGGPEINSWLQKLDIPFKFVDGLRVTDAATMEVVEMVLVGKVNKQIVQLISLAGGSAVGLCGRDGNLIRAR-SQGRAEIGFVGEVSSINPQLVQTLLEGGQIPVISSVAADETGQAYNINADTV 186          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_SYNSC (Acetylglutamate kinase OS=Synechococcus sp. (strain CC9605) GN=argB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.423e-46
Identity = 102/184 (55.43%), Postives = 129/184 (70.11%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA-DEFGQSYNINADTV 838
            RV +LSE+LP+IQ F G+ IV+KYGGAAM   +  +                 RPV+VHGGGPEIN WL+R  I   FRDGLRVTDA+TM++V MVLVGRVNK +V+ +N+ G  AVGLSG DG L  ARP  N    G VG+VARV+P V+EPL+  G++PVI+SVAA  + G+++NINADTV
Sbjct:   13 RVSVLSEALPYIQSFAGRRIVIKYGGAAMAHAELRSAVFRDLALLACVGV---RPVVVHGGGPEINQWLQRLEIPAEFRDGLRVTDADTMDVVEMVLVGRVNKQIVNGLNQLGTRAVGLSGSDGSLVEARPWGNGSH-GLVGDVARVNPDVLEPLLEKGYVPVISSVAATPDDGRAHNINADTV 192          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROM3 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=argB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.423e-46
Identity = 108/209 (51.67%), Postives = 134/209 (64.11%), Query Frame = 2
Query:  236 SLTSAATAVTDTQTPA--------EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            S  SAA  V   QT +          RV +LSE+LP+IQ+F G+ IV+KYGGAAM      N                  PV+VHGGGPEIN WL+R  I   FRDGLRVTDA+TM++V MVLVGRVNK +V+ +N+ GA AVGLSG DG L  ARP  +    G VG+VARV+  V+EP++  G++PVI+SVAA   G S+NINADTV
Sbjct:    3 SAKSAAALVEPCQTNSARRLTEDDSLRVSVLSEALPYIQRFSGRRIVIKYGGAAMA---HANLQEAVFRDLALLVSVGVEPVVVHGGGPEINQWLERLEIPAKFRDGLRVTDADTMDVVEMVLVGRVNKQIVNGLNQLGAKAVGLSGSDGSLVEARPWGDGSH-GLVGDVARVNTDVLEPILAKGYVPVISSVAATVEGCSHNINADTV 207          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_SYNPX (Acetylglutamate kinase OS=Synechococcus sp. (strain WH8102) GN=argB PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.222e-46
Identity = 101/184 (54.89%), Postives = 128/184 (69.57%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE-FGQSYNINADTV 838
            RV +LSE+LP+IQ+F G+ IV+KYGGAAM   +                    +PV+VHGGGPEIN WLKR  I   FRDGLRVTDA+TM++V MVLVGRVNK +V+ +N+ G  AVGLSG DG L  ARP  +    G VG+VARV+P V+EPL+  G++PVI+SVAA    G+++NINADTV
Sbjct:   13 RVSVLSEALPYIQRFSGRRIVIKYGGAAMAHAE---LREAVFRDLALLACVGVQPVVVHGGGPEINQWLKRLEIPAEFRDGLRVTDADTMDVVEMVLVGRVNKQIVNGLNQLGTRAVGLSGSDGSLVEARPWGDGSH-GLVGDVARVNPDVLEPLLERGYVPVISSVAATPGDGRAHNINADTV 192          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROM2 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=argB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.127e-43
Identity = 89/183 (48.63%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILSE+LP+IQ F G+ IV+KYGG+ M   + DN                  P+++HGGGPEIN WLK+  I P F +GLR+TD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R   +    G VGEV +++P +++PL++ G+IP+I+S+ +   G S+NINAD V
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVM---ENDNLKNAFFRDIALLSTVGVCPIVIHGGGPEINNWLKKLEISPKFENGLRITDQKTMEIVEMVLMGRVNKQIVKGINKTGSLAVGISGLDGNLIQSRELGDGSH-GLVGEVTKINPEILDPLISKGYIPIISSIGSTLEGISHNINADFV 184          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROMT (Acetylglutamate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=argB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.923e-43
Identity = 94/183 (51.37%), Postives = 120/183 (65.57%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV +LSE+LP+IQ+F  K IV+KYGG+AM      N                   V+VHGGGPEIN WL++ GI+PVF DGLR+TD  TM++V MVL GRVNK +VS IN  G  AVGL G+DG L  AR +      G VGEVA+V+  ++ PL+  G++PVI+SVA    G+S+NINADTV
Sbjct:   25 RVSVLSEALPYIQRFANKRIVIKYGGSAMADKTLQNAVFRDLALLSSVGVQI---VVVHGGGPEINQWLEKLGIKPVFLDGLRITDTETMDVVEMVLTGRVNKQIVSGINNHGRLAVGLCGIDGGLIEAR-TLGGGSHGLVGEVAKVNTKILSPLLEEGYVPVISSVANSSDGKSHNINADTV 203          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROM1 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=argB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.923e-43
Identity = 94/183 (51.37%), Postives = 120/183 (65.57%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV +LSE+LP+IQ+F  K IV+KYGG+AM      N                   V+VHGGGPEIN WL++ GI+PVF DGLR+TD  TM++V MVL GRVNK +VS IN  G  AVGL G+DG L  AR +      G VGEVA+V+  ++ PL+  G++PVI+SVA    G+S+NINADTV
Sbjct:   25 RVSVLSEALPYIQRFANKRIVIKYGGSAMADKTLQNAVFRDLALLSSVGVQI---VVVHGGGPEINQWLEKLGIKPVFLDGLRITDTETMDVVEMVLTGRVNKQIVSGINNHGRLAVGLCGIDGGLIEAR-TLGGGSHGLVGEVAKVNTKILSPLLEEGYVPVISSVANSSDGRSHNINADTV 203          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROMS (Acetylglutamate kinase OS=Prochlorococcus marinus (strain AS9601) GN=argB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.511e-43
Identity = 88/183 (48.09%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILSE+LP+IQ F G+ IV+KYGG+ M   + DN                  P+++HGGGPEIN WL++  I P F +GLR+TD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R   +    G VGEV +++P +++PL++ G+IP+I+S+ +   G S+NINAD V
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVM---ENDNLKNAFFRDIALLSTVGVCPIVIHGGGPEINNWLRKLEISPKFENGLRITDQKTMEIVEMVLMGRVNKEIVKGINKTGSLAVGISGLDGNLIQSRELGDGSH-GLVGEVTKINPEILDPLISKGYIPIISSIGSTLEGISHNINADFV 184          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROM9 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=argB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.511e-43
Identity = 87/183 (47.54%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILSE+LP+IQ F G+ IV+KYGG+ M   + DN                  P+++HGGGPEIN WLK+  I P F +GLR+TD  TM+IV MVL+GRVNK +V  +NK G+ AVG+SG+DG L  +R   +    G VGEV +++P +++PL++ G+IP+I+S+ +   G S+NINAD V
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVM---ENDNLKKAFFRDIALLSSVGVCPIVIHGGGPEINNWLKKLEISPKFENGLRITDQKTMDIVEMVLMGRVNKQIVKGVNKTGSLAVGISGLDGNLIQSRELGDGSH-GLVGEVTKINPEILDPLISKGYIPIISSIGSTMEGISHNINADFV 184          
The following BLAST results are available for this feature:
BLAST of CK935524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_SYNS96.386e-4755.43Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_SYNJA8.341e-4754.64Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_SYNSC1.423e-4655.43Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_PROM31.423e-4651.67Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_SYNPX9.222e-4654.89Acetylglutamate kinase OS=Synechococcus sp. (strai... [more]
ARGB_PROM21.127e-4348.63Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROMT1.923e-4351.37Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROM11.923e-4351.37Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROMS2.511e-4348.09Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROM92.511e-4347.54Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_F05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935524 ID=CK935524; Name=CK935524; organism=Citrus sinensis; type=EST; length=893bp
GGGGCTGCCCGAAGTGAGGAAGGAAGAGTCTCTCTGAACCCAAGCAATAT
CTGCGGAGAATATGGCCGCCGCCGCCGCCGCCTCCCTAGAAATTGCTCCT
TTTTTACAGTCACAGCTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCA
TTCTCCCTCCATCTTCAAAATCAAAACCCCACATGTCGAGAATTTCGCTT
CGAACCACCGCACCGAAATAACAAAATCATCCCGCTCTCTCACATCAGCA
GCAACAGCCGTAACTGACACACAGACCCCAGCCGAGTTCCGTGTCGACAT
TCTTTCCGAATCTCTTCCCTTCATTCAGAAATTCCGCGGAAAGACCATCG
TCGTCAAATACGGCGGCGCCGCTATGAAACCCAACCAAAAGGACAACCTC
CTCGCCTCCGTCGTAAAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCG
TCCTGTCTTGGTCCACGGCGGCGGTCCTGAGATCAATTTCTGGCTTAAAC
GTTTCGGAATCGAGCCCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCC
AACACTATGGAGATCGTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAG
CTTGGTTTCTCTCATCAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGG
GCATGGACGGGCGCCTCTTCACGGCCCGGCCCAGCCCAAACTCCGATAAA
CTGGGTTTCGTTGGTGAGGTAGCCCGCGTGGACCCCACGGTCATTGAGCC
TCTGGTAAACAGTGGACACATACCAGTGATTGCTTCTGTGGCTGCGGATG
AGTTTGGGCAATCTTATAACATCAATGCGGACACTGTGGCTGGGGAACTG
GCGGCGGCATTGGGTGCTGAGAAGCTGATATTGTTGACTGATG
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