CK935524

Overview
NameCK935524
Unique NameCK935524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935524_ssr65 microsatellite CK935524_ssr65:65..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2619 contig Csv1_Contig2619:1..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROM0 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=argB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.280e-43
Identity = 88/183 (48.09%), Postives = 122/183 (66.67%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILSE+LP+IQ F G+ IV+KYGG+ M+ +   N                  P+++HGGGPEIN WLK+  I P F +GLR+TD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R   +    G VGEV +++P +++PL++ G+IP+I+S+ +   G S+NINAD V
Sbjct:    6 RVSILSEALPYIQSFSGRKIVIKYGGSVMEDDDLKNAFFRDIALLSTVGVC---PIVIHGGGPEINNWLKKLEISPKFENGLRITDQKTMEIVEMVLMGRVNKQIVKGINKTGSLAVGISGLDGNLIQSRELGDGSH-GLVGEVTKINPEILDPLISKGYIPIISSIGSTVEGISHNINADFV 184          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_CYACA (Acetylglutamate kinase OS=Cyanidium caldarium GN=argB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.736e-42
Identity = 92/184 (50.00%), Postives = 115/184 (62.50%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-NSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            R  IL E+LP+IQ+FRG   V+KYGGAAMK                       + V VHGGGPEINFWL +  +E  F DG+R+TD  TM++V MVL G++NK LVSL+N  G   VGL G DG + TAR +   S  +G VGE+  VDP +I  L+   +IPVIASV ADE G++YNINAD V
Sbjct:    7 RTQILIEALPYIQQFRGAIFVIKYGGAAMKDLISKERLIADIVFLSCIGL---KLVCVHGGGPEINFWLNKMNVESKFHDGIRITDELTMQVVEMVLAGKINKELVSLLNNKGVKGVGLCGKDGTILTARKAQCGSIDMGLVGEIKSVDPYLILTLLKENYIPVIASVGADETGKTYNINADFV 187          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_THETN (Acetylglutamate kinase OS=Thermoanaerobacter tengcongensis GN=argB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.186e-42
Identity = 89/182 (48.90%), Postives = 122/182 (67.03%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADT 835
            +  IL E+LP+I+KF GKT+V+KYGG+AM      N                  PV+VHGGGPEI+ +LK+ GIE  F +GLRVTD  T EIV MVLVG++NK +VS+IN+ G  AVG+SG DG+L  A    ++  LG+VG++  V+  VIE L++ G+IPVIA V+  + G++YN+NADT
Sbjct:   13 KAHILVEALPYIKKFSGKTVVIKYGGSAMLDC---NLKKMVMQDVVLMKFVGLNPVIVHGGGPEISSFLKKLGIESKFVNGLRVTDEKTAEIVEMVLVGKINKEIVSMINELGGMAVGISGKDGKLLKAEKDLSNGDLGYVGKIVEVNIEVIEMLIDRGYIPVIAPVSFGDDGKTYNVNADT 191          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROMP (Acetylglutamate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=argB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.079e-42
Identity = 90/183 (49.18%), Postives = 120/183 (65.57%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILSE+LP+IQ+F G+ IVVKYGG+ M+  +                     PV++HGGGPEIN WL +  I P F +GLRVTD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R   +    G VGEV +++P +++PL+  G+IPVI+S+ +   G S+NINAD V
Sbjct:    7 RVSILSEALPYIQRFSGRKIVVKYGGSIMEDEKLKEAFFRDIALLSSVGVC---PVVIHGGGPEINRWLNKLEISPKFENGLRVTDEKTMEIVEMVLMGRVNKQIVRGINKTGSLAVGISGLDGNLIQSRELGDGSH-GLVGEVTQINPELLDPLIAKGYIPVISSIGSTADGISHNINADFV 185          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_PROM5 (Acetylglutamate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=argB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.378e-41
Identity = 91/183 (49.73%), Postives = 118/183 (64.48%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILSE+LP+IQ F G+ IVVKYGG+ M+  +                     PV++HGGGPEIN WL +  I P F  GLRVTD  TMEIV MVL+GRVNK +V  INK G+ AVG+SG+DG L  +R   +    G VGEV +++P ++EPL+  G+IPVI+S+ +   G S+NINAD V
Sbjct:    6 RVSILSEALPYIQSFSGRKIVVKYGGSIMEDEKLKKAFFRDIALLSSVGVC---PVVIHGGGPEINRWLSKLEISPKFEKGLRVTDDKTMEIVEMVLMGRVNKQIVRGINKTGSLAVGISGLDGNLIQSRELGDGSH-GLVGEVTQINPELLEPLIAKGYIPVISSIGSTTDGISHNINADFV 184          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_GRATL (Acetylglutamate kinase OS=Gracilaria tenuistipitata var. liui GN=argB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.378e-41
Identity = 90/183 (49.18%), Postives = 124/183 (67.76%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            RV ILS++LPF+Q+F G+T+VVKYGG+AMK     +                 + V+VHGGGP IN WLK+  I+P F +G+RVTD +TME+V MVLVG+VNK LV+L+N++   AVGLSG D  L  A       K  + G+V +V+  ++  L++SG+IPV+ASVA+D  GQ+YNINAD+V
Sbjct:    7 RVQILSDALPFVQRFHGRTLVVKYGGSAMKNVYLKSKIIEDILFLSYIGI---KVVIVHGGGPMINHWLKQVNIQPKFFNGIRVTDKDTMELVEMVLVGKVNKDLVTLLNRSSNLAVGLSGKDANLVVASSFFPDQKDNYTGKVQQVNIEIVNLLLSSGYIPVVASVASDLNGQAYNINADSV 186          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_SYNWW (Acetylglutamate kinase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=argB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 5.237e-41
Identity = 90/183 (49.18%), Postives = 118/183 (64.48%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 838
            + +IL E+LP+I+ F G+ +V+KYGGAAM   +                     P++VHGGGPEIN  L R GI+  F +G RVTDA TMEIV MVL G+VNK +V+ I+ +G  AVG+SG DG L  A P+  S K+GFVGEV  V+P +IE ++ +G+IPVIA +   E  QSYNINAD V
Sbjct:    8 KAEILVEALPYIKDFYGRRVVIKYGGAAMTDCELKQKVMQDIVLMKFVGM---HPIVVHGGGPEINQMLSRLGIQSEFVNGFRVTDAATMEIVEMVLGGKVNKEIVAGIHASGGKAVGISGKDGMLIQAHPADGSGKMGFVGEVQYVNPELIEKVIENGYIPVIAPIGIGEDQQSYNINADLV 187          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_THEP3 (Acetylglutamate kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=argB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.167e-40
Identity = 86/182 (47.25%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  290 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADT 835
            +  +L E+LP+I+KF GKT+V+KYGG+AM      N                  P++VHGGGPEIN  L+R GIE  F +GLRVTD  TMEIV MVL GR+NK +VSLIN+ G  A+G+SG DGRL  A    ++  +G+VG++  V+  VI  ++  G+IPVIA  +  + G++YN+NADT
Sbjct:   13 KAQVLIEALPYIKKFSGKTVVIKYGGSAMLDC---NLKRMVMQDIVLMKFVGLNPIVVHGGGPEINKMLERLGIESKFVNGLRVTDEATMEIVEMVLTGRINKEIVSLINELGGQAIGVSGKDGRLLKAEKDTSNGDIGYVGKIVDVNIDVITMMLEKGYIPVIAPTSFGDDGKTYNVNADT 191          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_THENN (Acetylglutamate kinase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=argB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.990e-40
Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 2
Query:  293 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADT 835
            V++L E+LP+I++F GKT V+K+GG+AMK   ++                  +PV+VHGGGP I+  +K  GIEPVF++G RVTD  TMEIV MVLVG++NK +V  IN  G  AVG+ G D +L  A        LGFVG+V +V+P ++  L+ + +IPVIA V   E G SYNINADT
Sbjct:    6 VNVLLEALPYIKEFYGKTFVIKFGGSAMK---EEKAKKAFIQDIILLKYTGIKPVIVHGGGPAISQMMKELGIEPVFKNGHRVTDERTMEIVEMVLVGKINKEIVMNINLHGGRAVGICGKDSKLIVAEKETKYGDLGFVGKVKQVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADT 183          
BLAST of CK935524 vs. ExPASy Swiss-Prot
Match: ARGB_THESQ (Acetylglutamate kinase OS=Thermotoga sp. (strain RQ2) GN=argB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 83/181 (45.86%), Postives = 117/181 (64.64%), Query Frame = 2
Query:  293 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADT 835
            V++L E+LP+I++F GKT V+K+GG+AMK   ++N                 +P++VHGGGP I+  +K  GIEPVF++G RVTD  TMEIV MVLVG++NK +V  +N  G  AVG+ G D +L  A        +G+VG+V +V+P ++  L+ + +IPVIA V   E G SYNINADT
Sbjct:    6 VNVLLEALPYIKEFYGKTFVIKFGGSAMK---QENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADT 183          
The following BLAST results are available for this feature:
BLAST of CK935524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARGB_PROM03.280e-4348.09Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_CYACA4.736e-4250.00Acetylglutamate kinase OS=Cyanidium caldarium GN=a... [more]
ARGB_THETN6.186e-4248.90Acetylglutamate kinase OS=Thermoanaerobacter tengc... [more]
ARGB_PROMP8.079e-4249.18Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_PROM51.378e-4149.73Acetylglutamate kinase OS=Prochlorococcus marinus ... [more]
ARGB_GRATL1.378e-4149.18Acetylglutamate kinase OS=Gracilaria tenuistipitat... [more]
ARGB_SYNWW5.237e-4149.18Acetylglutamate kinase OS=Syntrophomonas wolfei su... [more]
ARGB_THEP31.167e-4047.25Acetylglutamate kinase OS=Thermoanaerobacter pseud... [more]
ARGB_THENN1.990e-4047.51Acetylglutamate kinase OS=Thermotoga neapolitana (... [more]
ARGB_THESQ3.394e-4045.86Acetylglutamate kinase OS=Thermotoga sp. (strain R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_F05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935524 ID=CK935524; Name=CK935524; organism=Citrus sinensis; type=EST; length=893bp
GGGGCTGCCCGAAGTGAGGAAGGAAGAGTCTCTCTGAACCCAAGCAATAT
CTGCGGAGAATATGGCCGCCGCCGCCGCCGCCTCCCTAGAAATTGCTCCT
TTTTTACAGTCACAGCTTTCATTCTCATCAAAGTCAAAAGCAGGCTCTCA
TTCTCCCTCCATCTTCAAAATCAAAACCCCACATGTCGAGAATTTCGCTT
CGAACCACCGCACCGAAATAACAAAATCATCCCGCTCTCTCACATCAGCA
GCAACAGCCGTAACTGACACACAGACCCCAGCCGAGTTCCGTGTCGACAT
TCTTTCCGAATCTCTTCCCTTCATTCAGAAATTCCGCGGAAAGACCATCG
TCGTCAAATACGGCGGCGCCGCTATGAAACCCAACCAAAAGGACAACCTC
CTCGCCTCCGTCGTAAAAGACCTCGTTCTCCTGTCCGTTGTGGGACTCCG
TCCTGTCTTGGTCCACGGCGGCGGTCCTGAGATCAATTTCTGGCTTAAAC
GTTTCGGAATCGAGCCCGTTTTCCGTGACGGCCTCCGCGTCACTGATGCC
AACACTATGGAGATCGTGTCCATGGTTCTGGTGGGGAGGGTGAACAAGAG
CTTGGTTTCTCTCATCAACAAAGCCGGCGCCACCGCGGTTGGGCTCTCGG
GCATGGACGGGCGCCTCTTCACGGCCCGGCCCAGCCCAAACTCCGATAAA
CTGGGTTTCGTTGGTGAGGTAGCCCGCGTGGACCCCACGGTCATTGAGCC
TCTGGTAAACAGTGGACACATACCAGTGATTGCTTCTGTGGCTGCGGATG
AGTTTGGGCAATCTTATAACATCAATGCGGACACTGTGGCTGGGGAACTG
GCGGCGGCATTGGGTGCTGAGAAGCTGATATTGTTGACTGATG
back to top