EY756575

Overview
NameEY756575
Unique NameEY756575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756575_ssr456 microsatellite EY756575_ssr456:456..465. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756575_ssr547 microsatellite EY756575_ssr547:547..558. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4280 contig Csv1_Contig4280:166..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.195e-27
Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 2
Query:    5 ASAGI*HKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            A   + H++L R L SL+C K ++L K P  + V  +D+F FN  FT  + RIK+        V+E     E V +DR+Y +DAAIVRIMK+RKVL H  L++E  +QL    KP    +KKR+E LI R+YLERDK NP ++ YLA
Sbjct:  596 AQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPL----PPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.743e-26
Identity = 60/133 (45.11%), Postives = 83/133 (62.41%), Query Frame = 2
Query:   65 KVRVLQKLPKGRDVEDD--------DSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            K +VLQ++  G   + +        + FV N  FT    R+++  + +K  VEE     E V  DRQY++DAA+VRIMK RK L+H  L+TEL QQL+FP+  AD+KKR+ESLI+REY+ RD      YNY+A
Sbjct:  708 KPKVLQRVEGGGSEKKEGTVENLKNEKFVVNSKFTEKRCRVRIAQVNIKTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQLRFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 56/116 (48.28%), Postives = 83/116 (71.55%), Query Frame = 2
Query:   98 RDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            + +++ D F FN  F + L+R+KV A+  KET  E   T ++V +DR++Q++A+IVRIMK RK L H+ L++E+ +QL  +F   P  +KKRIESLI+REYLER K + +IYNY+A
Sbjct:  654 KSIDESDVFAFNTKFKSKLFRVKVMAVVQKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQDRKIYNYMA 769          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 66/144 (45.83%), Postives = 94/144 (65.28%), Query Frame = 2
Query:   26 KELRRTLQSLACGKV--RVLQKLPKGRDVED-DDSFVFNEGFTAPLYRIKVNAIQMK-ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            +EL+R LQSLA GK   R+L +  KG+D  D  D F  N+ F + L R+KV  +  K E+  E   T ++V  DR+ +V+AAIVRIMK RK L+H  L+ E+ QQL  +F   P  +K+RIE+LI+REYL RD+++ + Y Y+A
Sbjct:  634 RELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 57/138 (41.30%), Postives = 89/138 (64.49%), Query Frame = 2
Query:   29 ELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYL 436
            +L RTLQSL+C ++R L  +PK +    D  F  NE FT  LYR+K+N I +KE  +EN+   E+V +DRQ+++ A+IVR+MK ++ + H  L+  +   +K    P  +D+K  IE L+++EYLER+ N+  IY Y+
Sbjct:  598 DLTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLEREDND--IYTYV 733          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL2_PONAB (Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 2
Query:   26 KELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            KEL +T++SL    V+++    +  D++ + SF  N  F++   + K+     K+T +E   T   V +DR+  + AAIVRIMK RKVL H  LI E+  Q +    P  + +KK IE LID++Y+ER + +   Y+Y+A
Sbjct:  608 KELTKTIKSLL--DVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL2_HUMAN (Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 2
Query:   26 KELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            KEL +T++SL    V+++    +  D++ + SF  N  F++   + K+     K+T +E   T   V +DR+  + AAIVRIMK RKVL H  LI E+  Q +    P  + +KK IE LID++Y+ER + +   Y+Y+A
Sbjct:  608 KELTKTIKSLL--DVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL2_MOUSE (Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 51/140 (36.43%), Postives = 81/140 (57.86%), Query Frame = 2
Query:   26 KELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            KEL +T++SL    V+++    +  D++ + SF  N  F++   + K+     K+T +E   T   V +DR+  + AAIVRIMK RKVL H  LI E+  Q +    P  + +KK IE LID++Y+ER + +   Y+Y+A
Sbjct:  608 KELTKTIKSLL--DVKMINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSMQKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL2_CAEEL (Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  116 DSFV-FNEGFTAPLYRIKVNAIQMKETVE---ENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            DS V  N   T+   + ++ A Q+ + VE   E  + T +V QDR+Y ++ AIVRIMKTRKVL H  L+TE+  Q K    P    +KK IE LI++ Y++R   N + Y YLA
Sbjct:  664 DSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTDQNDE-YQYLA 776          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   32 LRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            L+ TL SLA  K+ +        ++     F  N+ F     +I +N   + +  EE  S  + V +DR+ Q+ AAIVRIMK RK L+H+ L+TE+  QL  +F  K   +KK I+ LI++EYL R +     Y+Y+A
Sbjct:  633 LKGTLTSLAKSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKEEIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSYVA 770          
The following BLAST results are available for this feature:
BLAST of EY756575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CUL1_ARATH5.195e-2745.58Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4_CAEEL5.743e-2645.11Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]
CUL3_DICDI6.350e-2548.28Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_CAEEL7.021e-2445.83Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL4_SCHPO1.198e-2341.30Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]
CUL2_PONAB4.873e-1736.43Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1[more]
CUL2_HUMAN4.873e-1736.43Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2[more]
CUL2_MOUSE6.365e-1736.43Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2[more]
CUL2_CAEEL1.916e-1342.11Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 S... [more]
CUL1_DICDI1.916e-1336.23Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-B08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756575 ID=EY756575; Name=EY756575; organism=Citrus sinensis; type=EST; length=724bp
CCACGCGTCCGCTGGCATTTAACATAAGGAACTGAGGAGGACTCTACAGT
CTCTTGCTTGCGGTAAAGTACGCGTCCTGCAAAAGTTGCCAAAGGGAAGG
GATGTGGAGGATGATGATTCATTTGTGTTCAATGAAGGATTTACTGCTCC
CCTTTATCGTATTAAGGTAAATGCTATACAGATGAAGGAAACAGTGGAAG
AAAACACTAGCACCACTGAAAGAGTATTTCAGGACCGTCAATATCAGGTG
GATGCTGCCATTGTTCGGATAATGAAGACTAGAAAAGTGTTGAGTCACAC
ACTTCTAATAACCGAACTCTTCCAACAGCTGAAATTTCCTATAAAGCCGG
CCGATCTGAAGAAAAGGATTGAGAGCCTTATCGATAGGGAGTACCTGGAG
CGTGACAAGAACAATCCGCAGATATATAATTACCTGGCCTAGTCCCCCAT
TTTGTCACACACACAAATGTGATGTTTTTCTTTGCATGGCGGCGTAATCA
AATGTTATCTCTCCCCTGTACAGAAAGTTGTAGTTCCTTTTTTTTCCTTC
TTCTTCTTTGTTTTTTCGTTTTTTAACCCAACATTTGTAATTGTAAAGTA
TAATCGGCCTTTCTTTTGAGACCTTTCATCTCATTCTGGACTTGTGAGCT
TCTTGAAATAAATTACTTATTTTTTTCTTTCTTTTAATCATATGAGAAGC
TGCACCTTGCTGGTTGCTGCNGTT
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