EY756575

Overview
NameEY756575
Unique NameEY756575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756575_ssr456 microsatellite EY756575_ssr456:456..465. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756575_ssr547 microsatellite EY756575_ssr547:547..558. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4280 contig Csv1_Contig4280:166..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   32 LRRTLQSLACGKVRVLQKLPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            L + LQ L   K+ VL+      D   ++ D       G+     R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RKVL H  L+ E+  QL    KP    +KK I+ LI++EYLER       Y+YLA
Sbjct:  636 LAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   32 LRRTLQSLACGKVRVLQKLPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            L + LQ L   K+ VL+      D   ++ D       G+     R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RKVL H  L+ E+  QL    KP    +KK I+ LI++EYLER       Y+YLA
Sbjct:  636 LAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 50/141 (35.46%), Postives = 72/141 (51.06%), Query Frame = 2
Query:   32 LRRTLQSLACGKVRVLQKLPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            L + LQ L   K+ VL+      D   ++ D       G+     R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RKVL H  L+ E+  QL    KP    +KK I+ LI++EYLER       Y+YLA
Sbjct:  636 LAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2
Query:  107 EDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIY 427
            + + ++  NE F     R+++N     E  +E+  T + + +DR+  + +AIVRIMK R+ L H +L+ E   Q+K  F  K +D+K+ I+ LI++EYLER   +  IY
Sbjct:  657 DPNSTYKINENFRMKKIRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLERQGRDEYIY 765          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL6_CAEEL (Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  158 RIKVNAIQMKETVEENTSTTERVFQ-DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            R+ +     K T +  T   +   + DR+Y++ A IVRIMKTRK L+HTLLI E+  QLK    P    +K  IE LI++ Y+ R +N   +Y YLA
Sbjct:  633 RVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729          
BLAST of EY756575 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  158 RIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 439
            RI +N     E   E  +  + + +DR+  + AAIVRIMK RK L+HT LI+E+  QL    KP    +KK I+ LI++EYLER + +   Y+YLA
Sbjct:  679 RININQPLKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774          
The following BLAST results are available for this feature:
BLAST of EY756575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CUL1_PONAB1.242e-1235.46Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE1.242e-1235.46Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN1.242e-1235.46Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL1_SCHPO2.767e-1234.86Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]
CUL6_CAEEL6.165e-1241.24Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 S... [more]
CUL1_DROME1.373e-1142.71Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-B08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756575 ID=EY756575; Name=EY756575; organism=Citrus sinensis; type=EST; length=724bp
CCACGCGTCCGCTGGCATTTAACATAAGGAACTGAGGAGGACTCTACAGT
CTCTTGCTTGCGGTAAAGTACGCGTCCTGCAAAAGTTGCCAAAGGGAAGG
GATGTGGAGGATGATGATTCATTTGTGTTCAATGAAGGATTTACTGCTCC
CCTTTATCGTATTAAGGTAAATGCTATACAGATGAAGGAAACAGTGGAAG
AAAACACTAGCACCACTGAAAGAGTATTTCAGGACCGTCAATATCAGGTG
GATGCTGCCATTGTTCGGATAATGAAGACTAGAAAAGTGTTGAGTCACAC
ACTTCTAATAACCGAACTCTTCCAACAGCTGAAATTTCCTATAAAGCCGG
CCGATCTGAAGAAAAGGATTGAGAGCCTTATCGATAGGGAGTACCTGGAG
CGTGACAAGAACAATCCGCAGATATATAATTACCTGGCCTAGTCCCCCAT
TTTGTCACACACACAAATGTGATGTTTTTCTTTGCATGGCGGCGTAATCA
AATGTTATCTCTCCCCTGTACAGAAAGTTGTAGTTCCTTTTTTTTCCTTC
TTCTTCTTTGTTTTTTCGTTTTTTAACCCAACATTTGTAATTGTAAAGTA
TAATCGGCCTTTCTTTTGAGACCTTTCATCTCATTCTGGACTTGTGAGCT
TCTTGAAATAAATTACTTATTTTTTTCTTTCTTTTAATCATATGAGAAGC
TGCACCTTGCTGGTTGCTGCNGTT
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