EY756561

Overview
NameEY756561
Unique NameEY756561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:339..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 60/167 (35.93%), Postives = 81/167 (48.50%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++SRWAMLG +G + PE+ ++ G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++ P +N
Sbjct:   98 IHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNN 250          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 59/167 (35.33%), Postives = 82/167 (49.10%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAP----TDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S        +++  + IL   VE   ++    P     DP+            YPGG F+PL  A     + E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   99 IHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVE--GYRVAGGPLGEIVDPL------------YPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 60/157 (38.22%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF V   VTGKGP ENL  H++DP +N
Sbjct:   63 IHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNN 215          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.608e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.608e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.608e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  101 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  100 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 57/157 (36.31%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP +NL+ H++DP +N
Sbjct:  102 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.407e-16
Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  100 IHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
The following BLAST results are available for this feature:
BLAST of EY756561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB23_SOYBN1.997e-1635.93Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB23_APIGR1.997e-1635.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.997e-1638.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB25_PETSP2.608e-1637.58Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC2.608e-1637.58Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC2.608e-1637.58Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC3.407e-1637.58Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC3.407e-1637.58Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB27_TOBAC3.407e-1636.31Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_TOBAC3.407e-1637.58Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756561 ID=EY756561; Name=EY756561; organism=Citrus sinensis; type=EST; length=651bp
CCACGCGTCCGGTGAATTCGCGCTGGGCCATGTTGGGGGTTGTTGGAATG
TTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGCTCCTCAATG
GTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCG
TGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGAC
ATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAG
CTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCA
ACTTTGCACCCACTGACGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGA
TTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGG
CAAAGGGCCATTTGAAAACCTCCTGCAACACATCTCTGACCCATGGCACA
ACACCATCGTCCAGACACTAAGTGGTAATTAATCAAAGATGGATTGGCCA
TCCCGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAG
TGAGATTTGAGCATCAATGTAAACATGGAAACTCTCAATGTACAGGGGAA
CTATGATGGTATTTATATTATCATTTTACACCAAAAAAAAAAAAAAAAAA
A
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