EY756561

Overview
NameEY756561
Unique NameEY756561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:339..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.884e-15
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   +   W   +   G+V      + Y +    +G      YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP E+L  HI+DP +N
Sbjct:  101 IHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAG-SQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAV------EGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNN 253          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.767e-15
Identity = 58/159 (36.48%), Postives = 77/159 (48.43%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PE+  K G+      W+ AG A+ F+     +     L H   I   W        V    + + Y +    +G       PGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:  101 IHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG-AQIFSEGGLDYAGNPNLIHAQSILAIWAC-----QVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 253          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 56/168 (33.33%), Postives = 79/168 (47.02%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVF-TKIGI-INAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            +++RWA+LG +G+L PE+  T  G+    P W+ AG         +Y  S + +          ++ +L   +E  R      P     DP+            YPG  F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP +NL  H++DP  N
Sbjct:   90 IHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTN 243          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.096e-14
Identity = 62/169 (36.69%), Postives = 78/169 (46.15%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTK-IGI-INAPQWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PEV  K +G+    P W+ AG         +Y  +       S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+ DP  N
Sbjct:  101 IHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDL--------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVAN 255          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.869e-14
Identity = 63/169 (37.28%), Postives = 80/169 (47.34%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGIIN--APQWYDAGKA-------EYFAS------SSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            ++ RWAMLG +G + PEV  K   ++   P W+ AG         +Y  +       S L V+ F  +L   VE  R   +   G  N                YPGG  F+PL  A  PT   E K KE+ NGRLAM +  GF VQ  VTGKGP ENLL H+ +P  N
Sbjct:   98 IHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDL--------------YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 252          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 57/169 (33.73%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTK---IGIINAPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            +++R  +LG +GM+ PE+      I   +A  W+ AG A        Y  + S +          ++ +L   VE  R      P     DP+            YPG  F+PL  A       E K KE+ NGRLAM A LGF VQ  VTGKGP ENL  H+++P  N
Sbjct:  107 IHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAEN 261          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 52/165 (31.52%), Postives = 73/165 (44.24%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSSTLFVIEFILFHYVE------IRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            +++RWAMLG +G   PE+  K G       W+ AG         +Y  + S +     +    V+      I  ++    P     DP+            YPG  F+PL  A       E K KE+ NGRLA  +  GF VQ  VTGKGP +NL  H+++P  N
Sbjct:   88 IHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPL------------YPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVN 240          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.984e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 52/148 (35.14%), Postives = 67/148 (45.27%), Query Frame = 3
Query:   12 VNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 410
            ++ RWAMLG +G +  E  T I       W DAGK E    SS           TL  IE ++  Y+E +R  +                 L P +  YPGG F+PL  A      D  K  E+ + RLAM+AFL F +Q   TGKGP
Sbjct:  143 IHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267          
The following BLAST results are available for this feature:
BLAST of EY756561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB21_WHEAT2.884e-1535.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH3.767e-1536.48Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_CHLMO1.096e-1433.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.096e-1436.69Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.869e-1437.28Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA2.699e-1333.73Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.750e-1231.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2F_SOLLC2.984e-1257.81Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.984e-1257.81Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB4C_ARATH5.091e-1235.14Chlorophyll a-b binding protein CP29.3, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756561 ID=EY756561; Name=EY756561; organism=Citrus sinensis; type=EST; length=651bp
CCACGCGTCCGGTGAATTCGCGCTGGGCCATGTTGGGGGTTGTTGGAATG
TTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGCTCCTCAATG
GTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCG
TGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGAC
ATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAG
CTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCA
ACTTTGCACCCACTGACGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGA
TTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGG
CAAAGGGCCATTTGAAAACCTCCTGCAACACATCTCTGACCCATGGCACA
ACACCATCGTCCAGACACTAAGTGGTAATTAATCAAAGATGGATTGGCCA
TCCCGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAG
TGAGATTTGAGCATCAATGTAAACATGGAAACTCTCAATGTACAGGGGAA
CTATGATGGTATTTATATTATCATTTTACACCAAAAAAAAAAAAAAAAAA
A
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