EY756561

Overview
NameEY756561
Unique NameEY756561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:339..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.091e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEAKE----KELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPG  F+PL  A   EAK     KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   74 YPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 137          
BLAST of EY756561 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  273 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 452
            YPGG F+PL      EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   48 YPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
The following BLAST results are available for this feature:
BLAST of EY756561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB2D_SOLLC5.091e-1256.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.091e-1256.25Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC5.091e-1256.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PINSY4.309e-1154.69Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_RAPSA5.628e-1154.69Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756561 ID=EY756561; Name=EY756561; organism=Citrus sinensis; type=EST; length=651bp
CCACGCGTCCGGTGAATTCGCGCTGGGCCATGTTGGGGGTTGTTGGAATG
TTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGCTCCTCAATG
GTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCG
TGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGAC
ATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAG
CTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCA
ACTTTGCACCCACTGACGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGA
TTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGG
CAAAGGGCCATTTGAAAACCTCCTGCAACACATCTCTGACCCATGGCACA
ACACCATCGTCCAGACACTAAGTGGTAATTAATCAAAGATGGATTGGCCA
TCCCGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAG
TGAGATTTGAGCATCAATGTAAACATGGAAACTCTCAATGTACAGGGGAA
CTATGATGGTATTTATATTATCATTTTACACCAAAAAAAAAAAAAAAAAA
A
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