EY756559

Overview
NameEY756559
Unique NameEY756559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:313..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.544e-19
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            ++LP+SCRAG+CS+C G++ +G VDQSE SFLDD QM EG++LTC +YP +D  I THKEE+L
Sbjct:   92 VELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 226
            ++LP+SC +G+CSSC GKV+ G VDQS+Q FLDD+QMG+GF L C  YP S+ TI+TH+E  LA
Sbjct:   36 IELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.186e-18
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 226
            ++LP+SC +G+CSSC GKV+ G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   36 IELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYLA 99          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.378e-17
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   17 SG*RIALDLPYSCRAGACSSCTGKVLSGTV-DQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +G    LDLP SCRAG+CS+C GK++SG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:   30 AGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.070e-17
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            ++LP+SC +G+CSSC GKV+ G VDQS+Q FLDD+QM +GF L C  YP S+ TI+TH+E  L
Sbjct:   36 IELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            ++LP+SC++G+CSSC  KV+ G VDQSEQ FLD++QM +GF++ C +YP SD TI TH+E  L
Sbjct:   36 IELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.010e-17
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            LDLP+SC +GACSSC GKV+ G ++Q +Q+FLD++Q+ +GFVL C  YP +D TI TH+E  L
Sbjct:   36 LDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            L+LPYSCR+G C +C GK++SG VDQS  SFL+++Q+ +G++LTC A P  D  + THK+ +L
Sbjct:   85 LELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.884e-12
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLP SC  G C++C  ++LSG VDQ +   +  +   +G+ L C AYP SD+ IETHKE+EL
Sbjct:   34 VDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
The following BLAST results are available for this feature:
BLAST of EY756559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER6_MAIZE9.544e-1961.90Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FERH_ANASP2.126e-1860.94Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_ANAVT6.186e-1859.38Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_APHSA1.378e-1757.14Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FERH_FREDI3.070e-1758.73Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERV_ANAVT4.010e-1757.14Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER2_PLEBO4.010e-1757.14Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER4_ARATH3.753e-1552.38Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER2_SYNP63.884e-1247.62Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756559 ID=EY756559; Name=EY756559; organism=Citrus sinensis; type=EST; length=509bp
TTCGTCGACCCACGCGTCCGGCTGAAGAATTGCGCTTGATCTTCCGTACT
CATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTCCTGTCTGGA
ACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGA
AGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAG
AGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATC
TCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAAT
GCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTT
TTATTTCTTGTTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCAT
CGTACCTAGAGGGTGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCT
ATAATTAAGAGTCAAGCAAGAACAATGGATCTTTCGTTGTATTTCAAAAA
AAAAAAAAA
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