EY756559

Overview
NameEY756559
Unique NameEY756559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:313..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.164e-24
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   34 ELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDLTG 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.164e-24
Identity = 50/63 (79.37%), Postives = 60/63 (95.24%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAG+CSSC GKV++G+VDQS+QSFLDDDQ+  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:   82 IDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.164e-24
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAGACS+C GK++SGTVDQS+QSFLDDDQ+  G+VLTC AYPTSD  IETHKEEEL
Sbjct:   36 IDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.164e-24
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            +DLPYSCRAG+CSSC GKV+SG+VDQS+QS+LDD Q+ +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   85 IDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.520e-24
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   34 ELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.985e-24
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            DLPYSCRAGACSSC GK++ G+VDQS+ SFLDDDQ+G GFVLTC AYP S+VTIETHKEE L G
Sbjct:   34 DLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.985e-24
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            ++LPYSCRAGACS+C GKVLSGT+DQSEQSFLDDDQMG GF+LTC AYPTSD  ++TH E++L
Sbjct:   35 IELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            DLPYSCRAGACSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:   34 DLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            LDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD QM  GFVLTC AYPTSD TI THKEE+L
Sbjct:   33 LDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            DLPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL
Sbjct:   34 DLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of EY756559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SOLNI1.164e-2478.13Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_SILPR1.164e-2479.37Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_MASLA1.164e-2479.37Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_MAIZE1.164e-2476.92Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER2_HYONI1.520e-2478.13Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_SOLLS1.985e-2478.13Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_BUMFI1.985e-2476.19Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_SOLLY2.593e-2476.56Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_SCEQU2.593e-2482.54Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_PHYAF2.593e-2480.65Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756559 ID=EY756559; Name=EY756559; organism=Citrus sinensis; type=EST; length=509bp
TTCGTCGACCCACGCGTCCGGCTGAAGAATTGCGCTTGATCTTCCGTACT
CATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTCCTGTCTGGA
ACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGA
AGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAG
AGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATC
TCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAAT
GCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTT
TTATTTCTTGTTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCAT
CGTACCTAGAGGGTGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCT
ATAATTAAGAGTCAAGCAAGAACAATGGATCTTTCGTTGTATTTCAAAAA
AAAAAAAAA
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