EY756559

Overview
NameEY756559
Unique NameEY756559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:313..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELA 226
            LDLPYSCRAG+CSSC GKV +GTVDQ +QSFLDDDQ+  GFVLTC AYP  DVTIETHKEE++A
Sbjct:   33 LDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            DLP+SCRAGACS+C GK++SGTVDQS+QSFLDDDQ+  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:   37 DLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            DLPYSCRAG+CSSC GKV +G VDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL
Sbjct:   34 DLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            LDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   34 LDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            LDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQ+  G+VLTC AYPTSD TIETHKEE+L
Sbjct:   34 LDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQM +GFVLTC AYP SDV IETHKEEEL G
Sbjct:   34 ELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELTG 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 48/65 (73.85%), Postives = 60/65 (92.31%), Query Frame = 2
Query:   29 IALDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            + +D+PYSCRAG+CSSC GK+++G+VDQS+QSFLDD+Q+ EG+VLTC AYP SDVTIETHKEEEL
Sbjct:   31 LGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.423e-24
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   34 ELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.777e-24
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            LDLPYSCRAG+CSSCTGKV +GTVDQ +QSFLDDDQ+  GFVLTC A+P  DVTIETHKEE++
Sbjct:   33 LDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.544e-24
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 2
Query:   29 IALDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 229
            + ++LPYSCRAG+CSSC GK++ G +DQS+QSFLDD+Q+ EG+VLTCAAYP SDV IETHKEEEL G
Sbjct:   30 LGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEELTG 96          
The following BLAST results are available for this feature:
BLAST of EY756559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_PHYES2.593e-2478.13Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_ANAVT2.593e-2479.03Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_TOBAC3.387e-2480.65Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_SYNY43.387e-2477.78Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY33.387e-2477.78Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_SCOJA3.387e-2478.13Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_SAMNI3.387e-2473.85Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER1_HYONI4.423e-2476.56Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_PHYAM5.777e-2477.78Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_LEUGL7.544e-2471.64Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756559 ID=EY756559; Name=EY756559; organism=Citrus sinensis; type=EST; length=509bp
TTCGTCGACCCACGCGTCCGGCTGAAGAATTGCGCTTGATCTTCCGTACT
CATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTCCTGTCTGGA
ACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGA
AGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAG
AGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATC
TCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAAT
GCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTT
TTATTTCTTGTTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCAT
CGTACCTAGAGGGTGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCT
ATAATTAAGAGTCAAGCAAGAACAATGGATCTTTCGTTGTATTTCAAAAA
AAAAAAAAA
back to top