EY756559

Overview
NameEY756559
Unique NameEY756559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:313..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.287e-23
Identity = 47/63 (74.60%), Postives = 58/63 (92.06%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAG+CSSC GKV+SG++DQS+QSFLDD Q+ +G+VLTC AYPTSDV IETHKE++L
Sbjct:   71 IDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.287e-23
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQ+ EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   83 IDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.681e-23
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAG+CSSC GK++SG +DQS+QSFLDDDQM  G+VLTC AYP SD+ IETHKEEEL
Sbjct:   79 IDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.681e-23
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQ+ EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   84 IDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.195e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 2
Query:   29 IALDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            + +DLPYSCRAG+CSSC GKV  G VDQS+ SFLDD+Q+GEG+VLTC AYP SD TIETHKEEEL
Sbjct:   31 VGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.195e-23
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 2
Query:   38 DLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            DLP SCRAGACS+C GK++SGTVDQSEQSFLDDDQ+  G+VLTC AYP SDVTIET+KEEEL
Sbjct:   35 DLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.195e-23
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 2
Query:   29 IALDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            + +DLPYSCRAG+CSSC GKV+ G VDQS+ SFLDD+Q+  GFVLTC AYPTSDV IETHKEE+L
Sbjct:   83 VGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 2.867e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAGACS+C GKV  GT+DQSEQ+FLDDDQMG GFVLTC AYP SD TI  H+E+EL
Sbjct:   36 IDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 3.744e-23
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            LDLPYSCRAGACS+C GK+ SG++DQS+QSFLDDDQ+  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   36 LDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
BLAST of EY756559 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 3.744e-23
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 2
Query:   35 LDLPYSCRAGACSSCTGKVLSGTVDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 223
            +DLPYSCRAGACS+C GKV +G+VDQS+QSFLDD Q+G+GFVLTC AYPTSD TI TH+EE L
Sbjct:   34 IDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
The following BLAST results are available for this feature:
BLAST of EY756559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER5_MAIZE1.287e-2374.60Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER1_SPIOL1.287e-2376.19Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER_WHEAT1.681e-2376.19Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER1_MESCR1.681e-2377.78Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_COLES2.195e-2375.38Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER1_SYNP22.195e-2380.65Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_PEA2.195e-2373.85Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_THAWE2.867e-2376.19Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER_SPIMA3.744e-2374.60Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_GUITH3.744e-2376.19Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-A03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756559 ID=EY756559; Name=EY756559; organism=Citrus sinensis; type=EST; length=509bp
TTCGTCGACCCACGCGTCCGGCTGAAGAATTGCGCTTGATCTTCCGTACT
CATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTCCTGTCTGGA
ACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGA
AGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAG
AGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATC
TCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAAT
GCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTT
TTATTTCTTGTTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCAT
CGTACCTAGAGGGTGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCT
ATAATTAAGAGTCAAGCAAGAACAATGGATCTTTCGTTGTATTTCAAAAA
AAAAAAAAA
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