EY756556

Overview
NameEY756556
Unique NameEY756556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:1..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756556 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.393e-15
Identity = 67/209 (32.06%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  316 SSVTPNVVVAADGSGN--FKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV----VDGST--TFKSATVAVVGEGFLARDITFQNT----AGPSKH----------QAVALRV--GADLSAFYNCDMLAYQDTLYVHSDRQFFVNCLIAGTVGFIFGNAAAVLQNVTSMHESQFPPKNGHSQG 870
            ++ T N VV+   S    FKT        P G T  ++I IK GVY E + +T+   N+   G+ R   +I  +        DGS   T  S+T+ +  + F A+ +T +N     A  +K           QAVAL V    D + F +  ++ YQDTLYV   R FF +C I+GTV FIFG+  A+  N   +   +   K+G+  G
Sbjct:   24 AATTYNAVVSKSSSDGKTFKTIADAIASAPAGSTP-FVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSG 229          
BLAST of EY756556 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.377e-15
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  334 VVVAADGSGNFKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQNTAG-PSKHQ--------AVALRVGADLSAFYNCDMLAYQDTLYVHSDRQFFVNCLIAGTVGFIFGNAAAVLQN 816
            V V   G GNF T        P      + I +KAG+YRE +++  +   I+ +G G+  T +       D  +  +S T + + +  + + ITF N+   PSK +        AVA  +G D SAFY+      QDTL+    R +F  C I G V FIFG   ++ Q+
Sbjct:   34 VFVDQSGHGNFTTIQKAIDSVPINNRHWFFINVKAGLYREKIKIPYEKPFIVLVGAGKRLTRVEWD----DHYSVAQSPTFSTLADNTVVKSITFANSYNFPSKGKMNKNPRTPAVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQS 199          
BLAST of EY756556 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.346e-12
Identity = 64/221 (28.96%), Postives = 84/221 (38.01%), Query Frame = 1
Query:  259 TVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTXXXXXXXXPQ-GGTKRYIIRIKAGVYRE---------------------NVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGSTTFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSD------RQFFVNCLIAGTVGFIFGNAAAVLQNVT 822
            T D W      G       S    N  VAADG+  +KT           GG  R  I +KAG+Y E                     N ++   + N       +T   +  S N   G  T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTL+V +       R +F N  I G   FIFG   AV    T
Sbjct:   60 TTDNWDPTGGVG-----AVSGFRANYAVAADGTAQYKTVQAAIDAAVNAGGVARRYISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVG--TLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCT 273          
BLAST of EY756556 vs. ExPASy Swiss-Prot
Match: PME2_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.594e-11
Identity = 66/219 (30.14%), Postives = 88/219 (40.18%), Query Frame = 1
Query:  259 TVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTXXXXXXXX-PQGGTKRYIIRIKAGVYRENVEVTKKH------------KNIMFIGDGRTRTIITGSR-NVVDGST------TFKSATVAVVGEGFLARDITFQN-----TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSD------RQFFVNCLIAGTVGFIFGNAAAVLQNVT 822
            T D W      G       S    N  VAADGS  +KT           GG  R  I +KAG Y E V V +               N + + +    T  +G++ N   G++      T +SAT  V    F AR++TF+N     T   +   AVAL V  D +   N  ++  QDTLY+ +       R +F N  I G   FIFG   AV    T
Sbjct:   60 TTDNWDPTGGVG-----AVSGFRANYAVAADGSAQYKTVQAAIDAAVADGGVARKYISVKAGTYNELVCVPESAPPITLYSLDANANNTVIVYNNANPTPASGAKTNPCMGTSSNATVGTVRSATAMVRASNFNARNLTFKNSYVEGTFADNNQSAVALAVRGDKAILENVSVIGNQDTLYLGATNNTMVIRAYFKNSFIQGDTDFIFGAGTAVFHGCT 273          
BLAST of EY756556 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.719e-11
Identity = 55/202 (27.23%), Postives = 89/202 (44.06%), Query Frame = 1
Query:  313 SSSVTPNVVVAADGSGNFKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIIT-GSRNVVDGSTTFKSATVAVVGEGFLARDITFQN------TAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSDRQFFVNCLIAGTVGFIFGNAAAVLQNVT-SMHESQFPPKNGH----SQGKADP 882
            SS +   ++V  + +  FKT        P        I I  G+Y E V + +    I   G G  +TII  G   + + S TF S    ++  G     ITF+N      ++ P+K    A+ +G D  A  +     +QDTLY    R ++  C+I+G + FIFG A ++ +  T  +    +PP   +    +QG+  P
Sbjct:   34 SSQIAKTIIVNPNDARYFKTVQSAIDSIPLQNQDWIRILISNGIYSEKVTIPRGKGYIYMQGGGIEKTIIAYGDHQLTNTSATFTSYPSNIIITG-----ITFKNKYNIASSSSPTKPAVAAMMLG-DKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSP 229          
BLAST of EY756556 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 52/182 (28.57%), Postives = 77/182 (42.31%), Query Frame = 1
Query:  304 LLQSSSVTPN-VVVAADGSGNFKTXXXXXXXXPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIG-----DGRTRTIITGSRNVV---DGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSDRQFFVNCLIAGTVGFIFG-NAAAVLQNV 819
            L  S +  P+  +V A   G++ T            T    I I+ G Y E V +      ++  G     D     ++T +  +     G +   +AT      G    ++   NT G + HQA+AL   AD   +Y C+   YQDTL   +  Q ++N  I G V FIFG +A A  QNV
Sbjct:   16 LAASRTTAPSGAIVVAKSGGDYTTIGDAIDALSTSTTDTQTIFIEEGTYDEQVYLPAMTGKVIIYGQTENTDSYADNLVTITHAISYEDAGESDDLTATFRNKAVGSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNV 197          
The following BLAST results are available for this feature:
BLAST of EY756556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PMEA_DICD31.393e-1532.06Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME29_ARATH2.377e-1531.18Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PME1_RALSO9.346e-1228.96Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME2_RALSO1.594e-1130.14Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME10_ARATH2.719e-1127.23Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME_ASPAC3.551e-1128.57Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-009-H12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756556 ID=EY756556; Name=EY756556; organism=Citrus sinensis; type=EST; length=937bp
TGCGGTACCGGTCCGGATTCTTTCGTAGAGCCCGCGTCCGAAAACCCTAT
GCGTGCCGCGATGACCAATCAGGGGACGTGTCTTGATGGGTTCTCTCATG
ATGATGCTAATAAGCACGTGCGGGATGCGTTGTCAGACGGCCAGGTTCAT
GTTGAGAAGATGTGTAGCAATGCGCTTGCTATGATCAAGAACATGACTGA
CACTGACATGATGATCATGAGGACTTCAAACAACAGGAAGCTGATAGAGG
AGACCAGTACGGTTGATGGGTGGCCGGCGTGGCTGTCCACCGGAGACAGG
AGGCTGTTGCAGTCCTCGTCGGTGACACCGAACGTGGTGGTGGCAGCAGA
TGGCAGCGGAAACTTTAAGACGGTGGCGGCAGCGGTGGCGGCGGCTCCTC
AGGGAGGCACTAAGCGGTATATTATTAGGATTAAAGCCGGTGTTTATCGG
GAAAATGTTGAGGTGACAAAGAAGCATAAAAATATAATGTTCATCGGTGA
CGGGAGGACTAGAACTATCATCACAGGAAGTAGAAATGTGGTTGATGGAA
GCACAACTTTCAAGTCTGCTACAGTTGCTGTTGTTGGTGAAGGATTCTTG
GCCCGAGACATTACATTCCAAAACACAGCCGGCCCCTCAAAGCACCAGGC
GGTGGCACTACGAGTGGGAGCTGACCTTTCAGCATTTTACAATTGCGATA
TGTTAGCTTACCAAGACACACTCTACGTCCACTCCGACCGCCAGTTCTTT
GTGAACTGCTTAATTGCTGGCACGGTTGGATTTATTTTTGGTAACGCTGC
AGCCGTGTTACAAAATGTGACATCCATGCACGAAAGCCAATTCCCGCCAA
AAAATGGTCACAGCCAAGGCAAGGCTGACCCTAACCAAACACCGGCATTG
TCATCCAAAATCTAGGATTGGTGCCCCTCCCATTTAA
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