EY756464

Overview
NameEY756464
Unique NameEY756464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:1168..1658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.649e-21
Identity = 47/90 (52.22%), Postives = 69/90 (76.67%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG  N I +K +  +L  + N+LP G + +GITSGASTPD+ VE V++K+ ++
Sbjct:  306 LDLLVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGDNNSIQHKPLGEDLFIESNFLPAGSVNVGITSGASTPDRVVEHVIQKLIDL 395          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.007e-20
Identity = 48/90 (53.33%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            VDL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RI   N I +K +  EL  +E +LP G +T+GITSGASTPD+ VE V++++  +
Sbjct:  306 VDLMVVIGGYNSSNTTHLQEIAVSRGIRSFHIDTPERIHTDNSIEHKPLGEELTVEELFLPSGPVTVGITSGASTPDRVVEHVIQRLIAL 395          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 47/91 (51.65%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RI  G N I +K +  +L  + ++LP+G + +GITSGASTPD+AVE+V++K+ ++
Sbjct:  306 LDLMVVIGGFNSSNTTHLQEIAVSRGIRSFHIDTPERIDVGSNSIEHKPLAADLCREGDFLPEGPVRVGITSGASTPDRAVEEVIEKLMQL 396          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 52/92 (56.52%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAY-KLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L  G I++GITSGASTPD+ VEDV+ K+ +I
Sbjct:  306 LDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.929e-20
Identity = 52/92 (56.52%), Postives = 71/92 (77.17%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAY-KLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +DL++V+GG+NSSNT+HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L  G I++GITSGASTPD+ VEDV+ K+ +I
Sbjct:  306 LDLMVVIGGFNSSNTTHLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.997e-20
Identity = 47/93 (50.54%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKR 288
            +D+++V+GG+NSSNT+HLQEIA ++ I S+ ID+ +RI    N I +K +  E+V K+N++P G+I +GITSGASTPDK V DV++K+  I +
Sbjct:  306 LDILVVIGGYNSSNTTHLQEIAINKNISSFHIDTPERISVKENSILHKPLKSEMVLKKNFIPDGEIKVGITSGASTPDKIVADVIEKLIAITK 398          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +D+++V+GG+NSSNT+HLQEIA  + I S+ ID+ +RI    N I +K +  EL  K+N+LP G+I +GITSGASTPDK V DV++K+ +I
Sbjct:  306 LDILVVIGGFNSSNTTHLQEIAITKNISSFHIDTPERISVKENSIFHKPLGSELELKKNFLPSGKINVGITSGASTPDKVVADVIEKLIDI 396          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 48/91 (52.75%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +D+++V+GG+NSSNT+HLQEIA  + I S+ ID+ +RI    N I +K +  EL  K N+LP G+I +GITSGASTPDK V DV++K+ +I
Sbjct:  306 LDILVVIGGFNSSNTTHLQEIAITKNISSFHIDTPERISVKENSIFHKPLGSELELKNNFLPSGKINVGITSGASTPDKVVADVIEKLIDI 396          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 47/97 (48.45%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEAL 300
            +DL++V+GG+NSSNT+HLQEIA  +GI S+ ID+ +RIG   N I +K +  +L  + N+LP+G+I +GITSGASTPD+ VE V++K+  +   + +
Sbjct:  306 LDLLVVIGGFNSSNTTHLQEIALAKGIRSFHIDTPERIGEIENTITHKPLGDDLRVESNFLPEGKINVGITSGASTPDRIVEHVIQKLINLSERKLM 402          
BLAST of EY756464 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.899e-19
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   13 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 282
            +D+++V+GG+NSSNT+HLQEIA    I S+ ID   RI    N I +K +  EL+ K+N++P G+I +GITSGASTPDK V DV++K+  I
Sbjct:  306 LDILVVIGGFNSSNTTHLQEIAISNNIESFHIDISDRISVENNSICHKPLESELILKKNFIPDGKIKVGITSGASTPDKIVADVIEKLIAI 396          
The following BLAST results are available for this feature:
BLAST of EY756464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM32.649e-2152.224-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS31.007e-2053.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC2.929e-2051.654-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT2.929e-2056.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM12.929e-2056.524-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP4.997e-2050.544-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS1.113e-1952.754-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM01.454e-1952.754-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA1.899e-1948.454-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM51.899e-1951.654-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756464 ID=EY756464; Name=EY756464; organism=Citrus sinensis; type=EST; length=502bp
CCACGCGTCCGGGTCGATCTTATCTTGGTTGTTGGTGGGTGGAACTCGAG
CAATACCTCACACCTTCAAGAGATTGCAGAAGACCGTGGAATTCCCTCAT
ACTGGATCGATAGTGAGAAGAGAATAGGTCCCGGAAACAAAATAGCATAT
AAATTGATGCATGGTGAGCTGGTGGAGAAAGAAAATTGGCTGCCGAAAGG
CCAGATCACAATCGGTATAACATCCGGTGCCTCCACCCCAGATAAGGCTG
TTGAAGACGTCCTTAAAAAGGTATTTGAGATCAAGCGTGAAGAAGCCTTG
CAATTAGCGTAAACTGAGGTCCAAACATACACATTATCAATAAAGTTCGA
TGTGATTGTATCACTAGATATTGTAAAATTATAAACACAGCCCTCTGCCG
GGTCTTTTATCAGTGCCCATGTAATCTGAAATTTATATTTTTTGTGCAAT
ATGAAGCTAGAGATTACAATTTCTAACCAAAAAAAAAAAAAAAAAAAAAA
AA
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