EY756460

Overview
NameEY756460
Unique NameEY756460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:177..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.751e-60
Identity = 101/149 (67.79%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L +++ YLL + W+PCLEFE + G+VYREHH+SPGYYDGRYWTMWKLPM+GCTD   VL E+ E +KEYP++F+RIIGFD+ RQVQC+SF+A KP G
Sbjct:   32 STVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.901e-60
Identity = 103/149 (69.13%), Postives = 127/149 (85.23%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   25 SNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.655e-60
Identity = 105/147 (71.43%), Postives = 124/147 (84.35%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            S+SAFP ++K+N DITS+A+NGGRV CM+VWPP  LKKFETLSYLP LS+E+LLKEI+YLL  GW+PCLEFE+    VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+ V  EV E +  YP + VRIIGFDNKRQVQCISF+A KP
Sbjct:   30 STSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.692e-60
Identity = 102/149 (68.46%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   25 SNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.692e-60
Identity = 103/149 (69.13%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   30 SNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.135e-59
Identity = 101/149 (67.79%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            +++AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+ SSPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:   25 ANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.483e-59
Identity = 102/149 (68.46%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   25 SNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.483e-59
Identity = 102/149 (68.46%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            +++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YLLR+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+  V+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   25 ANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.639e-58
Identity = 100/149 (67.11%), Postives = 127/149 (85.23%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 458
            S++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YL+RS W+PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDAT VL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   21 STAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of EY756460 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.639e-58
Identity = 101/147 (68.71%), Postives = 124/147 (84.35%), Query Frame = 3
Query:   12 SSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATHVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 452
            S+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YL+R+GW+PCLEF LE G+V R+++ SPGYYDGRYWTMWKLPM+GCTDA  V+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:   33 SASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of EY756460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_SPIOL1.751e-6067.79Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS7_FLAPR3.901e-6069.13Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS_SILPR6.655e-6071.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FLAPR8.692e-6068.46Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR8.692e-6069.13Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_FLATR1.135e-5967.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FLAPR1.483e-5968.46Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FLAPR1.483e-5968.46Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_HORVU1.639e-5867.11Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FRIAG1.639e-5868.71Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756460 ID=EY756460; Name=EY756460; organism=Citrus sinensis; type=EST; length=660bp
CCACGCGTCCGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAAT
GACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGT
GTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGC
CACTGTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCC
GGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCG
TGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGT
GGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCATGTTTTGAAGGAG
GTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGG
ATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGC
CACCAGGAGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATA
TTGTTGATTATTATTATGTGGAACCCCCATAATGATCATTCGATCAAAGA
GGGTTCGGACTGCGTTTAATTTGTACTTAAGCTGCTGNTGCTGCTGCTCA
AACTTTGTTGGGTTTCNNCCCGCCGNGTAGATCTTCANTTTATAATTGTG
GCTTAAAAAA
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