EY756458

Overview
NameEY756458
Unique NameEY756458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756458_ssr546 microsatellite EY756458_ssr546:546..557. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.086e-35
Identity = 68/95 (71.58%), Postives = 77/95 (81.05%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTC AYPTSDVT+ETHK+EE+
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.875e-35
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTC AYPTSDVT+ETH++E+M
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.532e-34
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 3
Query:  183 ANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            A   RG R+ A ATYKVKL+TPEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ++AG+VLTC AYP SD+ +ETHK+EE++
Sbjct:   35 AKQVRGARLRAQATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEELT 142          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.820e-34
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            ATYKV L+TP G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+CAGK            FL+DDQI+AG+VLTCVAYP  DVT+ETHK+E+++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.693e-33
Identity = 74/136 (54.41%), Postives = 94/136 (69.12%), Query Frame = 3
Query:   99 STSFIRNKPTVTSLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            S+S +R  P  T++ A+P     + G  A++ R  R+ A ATY VKLITPEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            +L+D QI  G+VLTC AYPTSDV +ETHK+EE++
Sbjct:   16 SSSSLRAAPAPTAV-ALPAAKVGIMGRSASSRR--RLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELT 148          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.888e-33
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 3
Query:  216 MATYKVKLITPEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            MATYKV LI  EG    I+CPDDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQ++AGYVLTCVAYPTSDVT+ETHK+E++
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.772e-33
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            ATYKVKL+TP+G+QE +CPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+Q++ G+VLTCVA+PTSDV +ETHK+EE++
Sbjct:    1 ATYKVKLVTPQGQQEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEELT 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.435e-33
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            ATYKV L+TP G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+C GK            FL+DDQI+AG+VLTCVA+P  DVT+ETHK+E++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            A+YKVKLITP+G QE ECPDD YIL+ AE+ GID+PYSCRAGSCS+CAGK            FL+D+QI+ G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ASYKVKLITPDGPQEFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEELT 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.098e-32
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            ATYKVKL+TP G+QE +CPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+QI  G+VLTCVAYP SD T+ETHK+EE++
Sbjct:    1 ATYKVKLVTPSGQQEFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEELT 96          
The following BLAST results are available for this feature:
BLAST of EY756458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_BRANA3.086e-3571.58Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER3_RAPSA6.875e-3570.53Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_WHEAT1.532e-3462.96Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER1_PHYES5.820e-3466.67Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_MAIZE1.693e-3354.41Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER1_APHFL2.888e-3369.07Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FERA_ALOMA3.772e-3364.58Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_PHYAM6.435e-3365.26Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_SAMNI1.098e-3265.63Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_COLES1.098e-3265.63Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756458 ID=EY756458; Name=EY756458; organism=Citrus sinensis; type=EST; length=732bp
CCACGCGTCCGGGTCACCAATTCTCTCTCTAGCTTCACATTCAGACACTC
AGAAAGCAACAGAAAATAACAATGGCCGCGCTCTCAAGCGCCATGGTCAG
CACCTCATTCATCAGAAACAAGCCAACAGTGACAAGCCTCAAGGCCATGC
CCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAACAACAACAGAGGT
GGACGTGTAATAGCCATGGCTACATACAAAGTCAAGCTCATTACACCCGA
GGGAGAGCAAGAAATTGAGTGTCCTGATGACACATATATTCTTGATGCAG
CTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGTTCTTGC
TCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTTGACCAGTCAGATGG
AAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTG
TTGCTTATCCTACAAGTGATGTTACTGTTGAGACACACAAGGATGAAGAA
ATGTCTTAATTATGCGGCGCTTTAATATAACATGGAGAATTTTGATATTA
TTATTATTAATATTGTGTATGGTTTGGTAATTTAGTGCCTTGTAAGGGGA
AATGTTGAATATTGACGTGCTTTCTTGAATGAGTAATATGAAAAGGGGGG
GATTTGCTCTGTACTTCCCATTGCTGTCACAAATGAAGNTGTTGTAGCTT
TACAATATAAAGATAGAATCATCTCTTTCTAT
back to top