EY756458

Overview
NameEY756458
Unique NameEY756458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756458_ssr546 microsatellite EY756458_ssr546:546..557. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.434e-32
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            ATYKV L TP G+Q IECPDDTYILDAAE+AG+DLPYSCRAG+CS+CAGK            FL+D Q+D G+VLTCVAYPTSD T+ THK+E++
Sbjct:    1 ATYKVTLKTPSGDQTIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  177 LKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            L A+N  G R+   ATY VKLITP+GE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ+ AG+VLTC AYP SDV +ETHK++++
Sbjct:   30 LPASNKLGDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  177 LKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            L A+N  G R+   ATY VKLITP+GE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ+ AG+VLTC AYP SDV +ETHK++++
Sbjct:   30 LPASNKLGDRLRMQATYNVKLITPDGEVELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.194e-32
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            ATYKVKL+TPEGE E+E PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQ++ G+VLTC AYP SDV +ETHK+EE++
Sbjct:    1 ATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEELT 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.171e-32
Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            ATYKVKL+TP+G  E ECPDD YILD AE+ G DLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ATYKVKLVTPDGPVEFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEELT 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.171e-32
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            A+YKVKL+TPEG QE ECPDD YILD AE+ GI LPYSCRAGSCS+CAGK            FL+DDQI+ G+VLTCVAY  SDVT+ETHK+EE++
Sbjct:    1 ASYKVKLVTPEGTQEFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEEELT 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.171e-32
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQ-EIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            ATYKVKL+TP G+  E ECPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYPTSDV +ETHK+EE++
Sbjct:    1 ATYKVKLVTPSGQPLEFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEEELT 97          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-31
Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 3
Query:  225 YKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            YKVKL+TPEGE+E ECPDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL DD +DAGYVLTC AY  SDV +ETHK+EE+
Sbjct:    4 YKVKLLTPEGEKEFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.214e-31
Identity = 68/123 (55.28%), Postives = 83/123 (67.48%), Query Frame = 3
Query:  135 SLKAMPNMGQALFGLKANNNRGGRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 503
            SL+A P    A+           R+ A ATY VKLITPEGE E++ PDD YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D Q+  G+VLTCVAYPTSDV +ETHK++++
Sbjct:   16 SLRAAPATTVAM-----TRGASSRLRAQATYNVKLITPEGEVELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of EY756458 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.585e-31
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 3
Query:  219 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 506
            A+YKVKLITPEG  E +CPDD YILD AE+ G DLPYSCRAGSCS+CAGK            FL+DDQ+  G+VLTCVAYP SDVT+ETHK+EE++
Sbjct:    1 ASYKVKLITPEGAVEFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELT 96          
The following BLAST results are available for this feature:
BLAST of EY756458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SCEQU1.434e-3266.32Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER1_ORYSJ1.872e-3259.63Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI1.872e-3259.63Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_HORVU3.194e-3265.63Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER_SOLAB4.171e-3266.67Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_MEDSA4.171e-3266.67Ferredoxin OS=Medicago sativa PE=1 SV=1[more]
FERB_ALOMA4.171e-3267.01Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER_PANGI1.214e-3167.74Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER5_MAIZE1.214e-3155.28Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_TOBAC1.585e-3165.63Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-008-H01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756458 ID=EY756458; Name=EY756458; organism=Citrus sinensis; type=EST; length=732bp
CCACGCGTCCGGGTCACCAATTCTCTCTCTAGCTTCACATTCAGACACTC
AGAAAGCAACAGAAAATAACAATGGCCGCGCTCTCAAGCGCCATGGTCAG
CACCTCATTCATCAGAAACAAGCCAACAGTGACAAGCCTCAAGGCCATGC
CCAACATGGGTCAGGCTTTGTTTGGCCTTAAAGCCAACAACAACAGAGGT
GGACGTGTAATAGCCATGGCTACATACAAAGTCAAGCTCATTACACCCGA
GGGAGAGCAAGAAATTGAGTGTCCTGATGACACATATATTCTTGATGCAG
CTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGTTCTTGC
TCTACTTGTGCTGGGAAAGTTGTCTCTGGTAGTGTTGACCAGTCAGATGG
AAGCTTTCTTGAGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTG
TTGCTTATCCTACAAGTGATGTTACTGTTGAGACACACAAGGATGAAGAA
ATGTCTTAATTATGCGGCGCTTTAATATAACATGGAGAATTTTGATATTA
TTATTATTAATATTGTGTATGGTTTGGTAATTTAGTGCCTTGTAAGGGGA
AATGTTGAATATTGACGTGCTTTCTTGAATGAGTAATATGAAAAGGGGGG
GATTTGCTCTGTACTTCCCATTGCTGTCACAAATGAAGNTGTTGTAGCTT
TACAATATAAAGATAGAATCATCTCTTTCTAT
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