EY756262

Overview
NameEY756262
Unique NameEY756262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 6.522e-81
Identity = 152/202 (75.25%), Postives = 169/202 (83.66%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            M  STMALSS SF G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGA+ G +    G  G++ DP  P   + +PLG
Sbjct:    1 MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA-GGPLGEVTDPLYP-GGSFDPLG 200          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 8.518e-81
Identity = 151/202 (74.75%), Postives = 169/202 (83.66%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMALSSS F GK V L+PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW KAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G ++DP  P   + +PLG
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVA-GGPLGVVVDPLYP-GGSFDPLG 200          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.898e-80
Identity = 152/202 (75.25%), Postives = 172/202 (85.15%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMA+SSS F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G++IDP  P   + +PLG
Sbjct:    1 MAAATMAISSSSFAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-GGPLGEVIDPLYP-GGSFDPLG 199          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.478e-80
Identity = 154/199 (77.39%), Postives = 167/199 (83.92%), Query Frame = 2
Query:  146 ATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            A S+MALSS S  GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA QV LMGAV G +    G  G++ DP  P   + +PLG
Sbjct:    3 AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-GGPLGEVTDPIYP-GGSFDPLG 196          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 2.478e-80
Identity = 149/200 (74.50%), Postives = 165/200 (82.50%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA STMALSS +F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+  D   P   + +PLG
Sbjct:    1 MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYP-GGSFDPLG 199          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 4.227e-80
Identity = 150/202 (74.26%), Postives = 169/202 (83.66%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMALSSS F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGPFSGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G++IDP  P   + +PLG
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-GGPLGEVIDPLYP-GGSFDPLG 200          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 2.098e-79
Identity = 150/202 (74.26%), Postives = 170/202 (84.16%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMALSSS F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVWFKAG+QIF EGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G++IDP  P   + +PLG
Sbjct:    1 MAAATMALSSSSFAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-GGPLGEVIDPLYP-GGSFDPLG 199          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 3.579e-79
Identity = 151/200 (75.50%), Postives = 166/200 (83.00%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA STMALSS +  GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+IL+IWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA-GGPLGEIVDPLYP-GGSFDPLG 197          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 2.320e-78
Identity = 142/189 (75.13%), Postives = 159/189 (84.13%), Query Frame = 2
Query:  173 SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            +  G+AV L+P+  E+    + +MRKT SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G++ DP  P   + +PLG
Sbjct:    2 TLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-GGPLGEVTDPIYP-GGSFDPLG 188          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 2.320e-78
Identity = 148/201 (73.63%), Postives = 166/201 (82.59%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA STMALSS +F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+  D   P   + +PLG
Sbjct:    1 MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYP-GGSFDPLG 200          
The following BLAST results are available for this feature:
BLAST of EY756262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB27_TOBAC6.522e-8175.25Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_PETSP8.518e-8174.75Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB24_PETSP1.898e-8075.25Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOYBN2.478e-8077.39Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_SINAL2.478e-8074.50Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP4.227e-8074.26Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_PETSP2.098e-7974.26Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_APIGR3.579e-7975.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_CUCSA2.320e-7875.13Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ARATH2.320e-7873.63Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756262 ID=EY756262; Name=EY756262; organism=Citrus sinensis; type=EST; length=1046bp
AAAAAAAAAAAAAAAAAAAAAAAGCAGTNNNCGNNNNTTCATATAAAAAA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCGACCCACGCGT
CCGCGAACACTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAAC
CTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTG
CCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAA
ACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAG
AGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTG
GTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGAC
CCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATG
GGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCA
ACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAAATC
TTCAGCGAGGGCGGGCTTGACTACTTGGGGAAACCAAACCTGATCCACGC
TCAAAACATCTTGGCCATCTGGGCTTTGCAAGTGGCCTTGATGGGAGCCG
TTGGAGGGTTACAAAATTGCTGGAGGGGCCGCTCGGGGAAAATGATTGAC
CCATTTGAACCCAGGTGGCCAGCTTTAAATCCATTGGGGTTTGGCTGATG
AACCCGGAAGTCTTTTGCTTAACCTCAAGGGTTAAGGAAATCAATAATAT
GGAAGGTTGGCTATGTTCCTCCAACGTTTGGTTTCCTCTGTTAAAGACCA
TTGCCCCCCGGAAAGGGAACCGTTTAAAAAATTTGGGCCCAACCCTTGGC
TTGACCCCGGCAAAAACAATGCGCTGGGCCAACCCCACAAACTTTGTTCC
CCGAAAATAGAACTCCCGGTTAGAAAAAATTCTTCCTCCTTCCGGATCTC
TGGGAATAAGGGAAATACGGTGTGGAGACCACGGAAGAATTTTATT
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