EY756262

Overview
NameEY756262
Unique NameEY756262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 3.832e-73
Identity = 144/202 (71.29%), Postives = 162/202 (80.20%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA +TMALSS +  GKA        ++   GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA+QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 MAAATMALSSPALAGKAAA------KVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-GGPLGEVVDPLYP-GGSFDPLG 194          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.610e-71
Identity = 147/200 (73.50%), Postives = 159/200 (79.50%), Query Frame = 2
Query:  143 MATSTMALSSS-FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA STMALSSS   G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLG P+LIHAQ+ILAIWA QV LMGAV G +    G  G++ DP  P   + +PLG
Sbjct:    1 MAASTMALSSSSLAGQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-GGPLGEVTDPIYP-GGSFDPLG 189          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.103e-71
Identity = 138/196 (70.41%), Postives = 154/196 (78.57%), Query Frame = 2
Query:  182 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G++ DP  P   + +PLG
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-GGPLGEVTDPIYP-GGSFDPLG 207          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 3.587e-71
Identity = 140/200 (70.00%), Postives = 156/200 (78.00%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEP 712
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG P LIHAQ+ILAIWA QV LMGA+ G +    G  G++ DP  P
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA-GGPLGEVTDPIYP 203          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 3.587e-71
Identity = 140/200 (70.00%), Postives = 156/200 (78.00%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVN-LAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEP 712
            MA+  +    +F G  ++ + P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG P LIHAQ+ILAIWA QV LMGA+ G +    G  G++ DP  P
Sbjct:    5 MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA-GGPLGEVTDPIYP 203          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.912e-70
Identity = 135/204 (66.18%), Postives = 155/204 (75.98%), Query Frame = 2
Query:  143 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLGFG 745
            MA +TMA++S + VGK    A    ++   GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + G P+L+HAQ+ILAIWA QV LMGAV G  +   GR G+++DP      + +PLG G
Sbjct:    1 MAAATMAITSRALVGKP---AAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEG-YHVAGGRLGEVVDPLY-LGGSFDPLGLG 199          

HSP 2 Score: 28.1054 bits (61), Expect = 1.912e-70
Identity = 25/69 (36.23%), Postives = 34/69 (49.28%), Query Frame = 1
Query:  751 NPEVFCLTSRVKEINNMEGWLCSSNVWFPLLKTIAPRKGNRLKNLGPTLGLTPAKTMRWANPTNFVPRK 957
            +PE F    +VKEI N  G L   +++   ++ I   KG  ++NL   L   P     WA  TNFVP K
Sbjct:  201 DPERFA-ELKVKEIKN--GRLAMFSMFGFFVQAIVTGKGP-IENLADHL-TDPVNNNAWAYATNFVPGK 264          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 8.835e-70
Identity = 142/204 (69.61%), Postives = 158/204 (77.45%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLG PNL+HAQ+ILAIWA QV LMGAV G +    G  G+ +D   P   A +PLG
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYR-VGGGPLGEGLDQLYP-GGAFDPLG 197          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 2.842e-68
Identity = 138/205 (67.32%), Postives = 155/205 (75.61%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MATS +   S+F G+        NEL        GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLG PNLIHAQ+ILAIWA QV LMG V G +    G  G+ +DP  P   A +PLG
Sbjct:    1 MATSAIQ-QSAFAGQTA--LKQSNELVCKIGAVGGGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-VGGGPLGEGLDPIYP-GGAFDPLG 198          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 8.269e-68
Identity = 126/163 (77.30%), Postives = 138/163 (84.66%), Query Frame = 2
Query:  251 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLG P+L+HAQ+ILAIWA QV LMGAV G +    G  G+++DP  P   + +PLG
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-GGPLGEVVDPLYP-GGSFDPLG 161          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.406e-67
Identity = 135/204 (66.18%), Postives = 156/204 (76.47%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWPALNPLG 739
            MA S +  ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG PNL+HAQ+ILAIWA+QV LMG V G +    G  G+ +D   P   A +PLG
Sbjct:    1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR-VGGGPLGEGLDKVYP-GGAFDPLG 196          
The following BLAST results are available for this feature:
BLAST of EY756262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB22_ORYSJ3.832e-7371.29Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_SOYBN1.610e-7173.50Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY2.103e-7170.41Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY3.587e-7170.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY3.587e-7170.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB48_MAIZE1.912e-7066.18Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_SILPR8.835e-7069.61Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI2.842e-6867.32Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_PEA8.269e-6877.30Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_ORYSJ2.406e-6766.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756262 ID=EY756262; Name=EY756262; organism=Citrus sinensis; type=EST; length=1046bp
AAAAAAAAAAAAAAAAAAAAAAAGCAGTNNNCGNNNNTTCATATAAAAAA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCGACCCACGCGT
CCGCGAACACTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAAC
CTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTG
CCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAA
ACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAG
AGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTG
GTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGAC
CCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATG
GGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCA
ACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAAATC
TTCAGCGAGGGCGGGCTTGACTACTTGGGGAAACCAAACCTGATCCACGC
TCAAAACATCTTGGCCATCTGGGCTTTGCAAGTGGCCTTGATGGGAGCCG
TTGGAGGGTTACAAAATTGCTGGAGGGGCCGCTCGGGGAAAATGATTGAC
CCATTTGAACCCAGGTGGCCAGCTTTAAATCCATTGGGGTTTGGCTGATG
AACCCGGAAGTCTTTTGCTTAACCTCAAGGGTTAAGGAAATCAATAATAT
GGAAGGTTGGCTATGTTCCTCCAACGTTTGGTTTCCTCTGTTAAAGACCA
TTGCCCCCCGGAAAGGGAACCGTTTAAAAAATTTGGGCCCAACCCTTGGC
TTGACCCCGGCAAAAACAATGCGCTGGGCCAACCCCACAAACTTTGTTCC
CCGAAAATAGAACTCCCGGTTAGAAAAAATTCTTCCTCCTTCCGGATCTC
TGGGAATAAGGGAAATACGGTGTGGAGACCACGGAAGAATTTTATT
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