EY756262

Overview
NameEY756262
Unique NameEY756262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1046
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.122e-15
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 2
Query:  293 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 547
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ 144          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.385e-14
Identity = 70/208 (33.65%), Postives = 93/208 (44.71%), Query Frame = 2
Query:  143 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGKP----NLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKMIDPFEPRWP--ALNPLGF 742
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLG P    NL     ILAI  L +A       ++           DP + ++P  A +PLGF
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNPVPWGNL---PTILAIEFLAIAFAEQQRTMEK----------DPEKKKYPGGAFDPLGF 177          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.809e-14
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  254 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ 547
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ 144          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.297e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  323 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQI 550
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          

HSP 2 Score: 73.559 bits (179), Expect = 2.212e-12
Identity = 53/138 (38.41%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  332 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGKPNLIHAQNILAIWALQVALMGAVGGLQNCWRGRSGKM---IDPFEPRWPALNPL 736
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          N  A+ ALQV     V  L+  WRG  G +    +  +  +P  +PL
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQV-----VAPLE-YWRGNGGFLWNDEETVDQSYPGFDPL 488          
BLAST of EY756262 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.448e-11
Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  326 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGKP 586
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG+P
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP 133          
The following BLAST results are available for this feature:
BLAST of EY756262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB12_SOLLC8.122e-1546.51Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB121_HORVU1.385e-1433.65Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY1.809e-1443.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
LH18_EUGGR1.297e-1246.05Light-harvesting complex I LH38 proteins (Fragment... [more]
CB11_SOLLC5.448e-1143.82Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756262 ID=EY756262; Name=EY756262; organism=Citrus sinensis; type=EST; length=1046bp
AAAAAAAAAAAAAAAAAAAAAAAGCAGTNNNCGNNNNTTCATATAAAAAA
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCGACCCACGCGT
CCGCGAACACTAGAGCTCACCAACAACTCCGATCATTGTAAAATGGCAAC
CTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTG
CCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCGTAAA
ACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAG
AGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTGACTG
GTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGAC
CCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATG
GGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCA
ACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAAATC
TTCAGCGAGGGCGGGCTTGACTACTTGGGGAAACCAAACCTGATCCACGC
TCAAAACATCTTGGCCATCTGGGCTTTGCAAGTGGCCTTGATGGGAGCCG
TTGGAGGGTTACAAAATTGCTGGAGGGGCCGCTCGGGGAAAATGATTGAC
CCATTTGAACCCAGGTGGCCAGCTTTAAATCCATTGGGGTTTGGCTGATG
AACCCGGAAGTCTTTTGCTTAACCTCAAGGGTTAAGGAAATCAATAATAT
GGAAGGTTGGCTATGTTCCTCCAACGTTTGGTTTCCTCTGTTAAAGACCA
TTGCCCCCCGGAAAGGGAACCGTTTAAAAAATTTGGGCCCAACCCTTGGC
TTGACCCCGGCAAAAACAATGCGCTGGGCCAACCCCACAAACTTTGTTCC
CCGAAAATAGAACTCCCGGTTAGAAAAAATTCTTCCTCCTTCCGGATCTC
TGGGAATAAGGGAAATACGGTGTGGAGACCACGGAAGAATTTTATT
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