EY756251

Overview
NameEY756251
Unique NameEY756251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:702..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_DINSH (Elongation factor Tu OS=Dinoroseobacter shibae (strain DFL 12) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V+       E ++MVMPGD +K  VELI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  304 AEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVTL-----PEGTEMVMPGDNLKFGVELIAPIAMEDGLRFAIREGGRTVGAGVVSKIIE 391          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_DEIRA (Elongation factor Tu OS=Deinococcus radiodurans GN=tufA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 61/93 (65.59%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            ASVYVL K+EGGRHS FF GYRPQFY RTTDVTG V     +  E  +MVMPGD V   VELI P+A E+G+RFAIREGG+TVGAGV+  ++E
Sbjct:  318 ASVYVLSKDEGGRHSAFFGGYRPQFYFRTTDVTGVV-----ELQEGVEMVMPGDNVTFTVELIKPIAMEEGLRFAIREGGRTVGAGVVSKVLE 405          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_BORPE (Elongation factor Tu OS=Bordetella pertussis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D   + +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 AEVYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_BORPA (Elongation factor Tu OS=Bordetella parapertussis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D   + +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 AEVYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_BORBR (Elongation factor Tu OS=Bordetella bronchiseptica GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D   + +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  II+
Sbjct:  309 AEVYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_BORA1 (Elongation factor Tu OS=Bordetella avium (strain 197N) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 57/93 (61.29%), Postives = 73/93 (78.49%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VY+L KEEGGRH+PFF GYRPQFY RTTDVTG +     D  ++ +MV+PGD V M V+L+ P+A E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  309 AEVYILSKEEGGRHTPFFNGYRPQFYFRTTDVTGTI-----DLPQDKEMVLPGDNVTMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKILK 396          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_ALTMD (Elongation factor Tu OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.320e-28
Identity = 60/93 (64.52%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG V     +  E  +MVMPGD +K  VELI P+A E+G+RFAIREGG+TVGAGV+  I++
Sbjct:  307 AEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAV-----ELPEGVEMVMPGDNLKFKVELIAPIAMEEGLRFAIREGGRTVGAGVVSKILD 394          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 277
            + VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V     +  E ++MVMPGD VK+ V+LI P+A E+G+RF+IREGG+TVGAGV+ SI
Sbjct:  309 SEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGTV-----ELPEGTEMVMPGDNVKLGVKLIAPIAMEEGLRFSIREGGRTVGAGVVSSI 394          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_SILPO (Elongation factor Tu OS=Silicibacter pomeroyi GN=tuf1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 61/93 (65.59%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 283
            A  Y+L KEEGGRH+PFFA YRPQFY RTTDVTG V+       E ++MVMPGD V   VELI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  304 AEAYILTKEEGGRHTPFFANYRPQFYFRTTDVTGTVTLA-----EGTEMVMPGDNVGFTVELIAPIAMEDGLRFAIREGGRTVGAGVVSKIIE 391          
BLAST of EY756251 vs. ExPASy Swiss-Prot
Match: EFTU_NEIG1 (Elongation factor Tu OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 2
Query:    5 ASVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 280
            A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V+      ++  +MVMPG+ V + VELI P+A E+G+RFAIREGG+TVGAGV+ S+I
Sbjct:  307 AEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGAVT-----LEKGVEMVMPGENVTITVELIAPIAMEEGLRFAIREGGRTVGAGVVSSVI 393          
The following BLAST results are available for this feature:
BLAST of EY756251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DINSH2.320e-2865.59Elongation factor Tu OS=Dinoroseobacter shibae (st... [more]
EFTU_DEIRA2.320e-2865.59Elongation factor Tu OS=Deinococcus radiodurans GN... [more]
EFTU_BORPE2.320e-2862.37Elongation factor Tu OS=Bordetella pertussis GN=tu... [more]
EFTU_BORPA2.320e-2862.37Elongation factor Tu OS=Bordetella parapertussis G... [more]
EFTU_BORBR2.320e-2862.37Elongation factor Tu OS=Bordetella bronchiseptica ... [more]
EFTU_BORA12.320e-2861.29Elongation factor Tu OS=Bordetella avium (strain 1... [more]
EFTU_ALTMD2.320e-2864.52Elongation factor Tu OS=Alteromonas macleodii (str... [more]
EFTU_SPHWW3.030e-2865.93Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_SILPO3.030e-2865.59Elongation factor Tu OS=Silicibacter pomeroyi GN=t... [more]
EFTU_NEIG13.030e-2865.22Elongation factor Tu OS=Neisseria gonorrhoeae (str... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-006-D02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756251 ID=EY756251; Name=EY756251; organism=Citrus sinensis; type=EST; length=412bp
CCACGCGTCCGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCAC
CTTTCTTTGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTG
ACTGGAAGGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGAT
GGTTATGCCTGGCGACCGTGTCAAGATGGTTGTGGAGCTTATTATGCCAG
TGGCTTGTGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACT
GTTGGAGCTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACT
TTCATGGGCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCA
TATTCTTAAGTTTTTATGGAATTAGTTTCACCATTCTAGGAAAAAAAAAA
AAAAAAAAAAAA
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